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81 lines
1.8 KiB
Bash
81 lines
1.8 KiB
Bash
#!/bin/bash
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export WORKSPACE=$(pwd)
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# gfortran
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sudo apt install build-essential
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sudo apt install gfortran
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gsettings set org.gnome.nautilus.preferences default-folder-viewer 'list-view'
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# install open mpi 2.1.1
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curl https://download.open-mpi.org/release/open-mpi/v2.1/openmpi-2.1.1.tar.bz2 --output openmpi-2.1.1.tar.bz2
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tar -jxf openmpi-2.1.1.tar.bz2
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cd openmpi-2.1.1
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./configure --prefix=$HOME/opt/openmpi
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make all
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make install
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echo "export PATH=\$PATH:\$HOME/opt/openmpi/bin" >> $HOME/.bashrc
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echo "export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:\$HOME/opt/openmpi/lib" >> $HOME/.bashrc
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source ~/.$1rc
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cd ..
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rm openmpi-2.1.1.tar.bz2
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# install miniconda
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curl https://repo.anaconda.com/miniconda/Miniconda3-py39_4.10.3-Linux-x86_64.sh --output Miniconda3-py39_4.10.3-Linux-x86_64.sh
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$1 Miniconda3-py39_4.10.3-Linux-x86_64.sh -b
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source ~/.$1rc
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# create python 2.7 environment
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conda init $1
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source ~/.$1rc
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rm Miniconda3-py39_4.10.3-Linux-x86_64.sh
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conda create -n py2_7 python=2.7
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source ~/miniconda3/etc/profile.d/conda.sh
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conda activate py2_7
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python --version
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pip install --user numpy scipy matplotlib ipython jupyter pandas sympy nose
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# setup petsc
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git clone https://gitlab.com/petsc/petsc
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cd petsc
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git checkout maint-3.8
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./configure --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --download-fblaslapack --with-debugging=0 COPTFLAGS='-O3 -march=native -mtune=native' CXXOPTFLAGS='-O3 -march=native -mtune=native' FOPTFLAGS='-O3 -march=native -mtune=native'
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make PETSC_DIR=$WORKSPACE/petsc PETSC_ARCH=arch-linux2-c-opt all
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make PETSC_DIR=$WORKSPACE/petsc PETSC_ARCH=arch-linux-c-opt check
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cd ..
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# setup petsc4py
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git clone https://Icolecchio@bitbucket.org/petsc/petsc4py.git
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cd petsc4py
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git checkout maint-3.8
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export PETSC_DIR=$WORKSPACE/petsc
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python setup.py build
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python setup.py install --user
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python setup.py test
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cd .. |