Install only via venv

2 years ago · c641704839
parent d1af191f70
commit c641704839
4 changed files with 110 additions and 108 deletions
--- a/10
+++ b/10
@ -1,19 +1,13 @@

 install: 
-	. ./script_install.sh
+	./script_install.sh

 run: 
 	./run_simulation.sh

-fftma:
-	cd fftma_module/gen && python3 setup.py install --user
-
-binaries: 
-	./script_fortran.sh
-
 test: binaries
 	cd tests/integration && python3 -m unittest test.py

 perf: binaries
 	cd tests/performance && python3 generation.py
-	cd tests/performance && python3 connectivity.py
+	cd tests/performance && python3 connectivity.py
--- a/requirements.txt
+++ b/requirements.txt
@ -1,11 +1,102 @@
-numpy
-scipy
-matplotlib
-ipython
-jupyter
-pandas
-sympy
-nose
-mpi4py
-Benchmarker==4.0.1
-memory_profiler
+anyio==3.6.2
+argon2-cffi==21.3.0
+argon2-cffi-bindings==21.2.0
+arrow==1.2.3
+asttokens==2.2.1
+attrs==23.1.0
+backcall==0.2.0
+beautifulsoup4==4.12.2
+bleach==6.0.0
+cffi==1.15.1
+comm==0.1.3
+contourpy==1.0.7
+cycler==0.11.0
+debugpy==1.6.7
+decorator==5.1.1
+defusedxml==0.7.1
+executing==1.2.0
+fastjsonschema==2.16.3
+fonttools==4.39.3
+fqdn==1.5.1
+idna==3.4
+ipykernel==6.22.0
+ipython==8.13.1
+ipython-genutils==0.2.0
+ipywidgets==8.0.6
+isoduration==20.11.0
+jedi==0.18.2
+Jinja2==3.1.2
+jsonpointer==2.3
+jsonschema==4.17.3
+jupyter==1.0.0
+jupyter-console==6.6.3
+jupyter-events==0.6.3
+jupyter_client==8.2.0
+jupyter_core==5.3.0
+jupyter_server==2.5.0
+jupyter_server_terminals==0.4.4
+jupyterlab-pygments==0.2.2
+jupyterlab-widgets==3.0.7
+kiwisolver==1.4.4
+MarkupSafe==2.1.2
+matplotlib==3.7.1
+matplotlib-inline==0.1.6
+memory-profiler==0.61.0
+mistune==2.0.5
+mpi4py==3.1.4
+mpmath==1.3.0
+nbclassic==0.5.6
+nbclient==0.7.4
+nbconvert==7.3.1
+nbformat==5.8.0
+nest-asyncio==1.5.6
+nose==1.3.7
+notebook==6.5.4
+notebook_shim==0.2.3
+numpy==1.24.3
+packaging==23.1
+pandas==2.0.1
+pandocfilters==1.5.0
+parso==0.8.3
+petsc==3.19.0
+petsc4py==3.19.0
+pexpect==4.8.0
+pickleshare==0.7.5
+Pillow==9.5.0
+platformdirs==3.5.0
+prometheus-client==0.16.0
+prompt-toolkit==3.0.38
+psutil==5.9.5
+ptyprocess==0.7.0
+pure-eval==0.2.2
+pycparser==2.21
+Pygments==2.15.1
+pyparsing==3.0.9
+pyrsistent==0.19.3
+python-dateutil==2.8.2
+python-json-logger==2.0.7
+pytz==2023.3
+PyYAML==6.0
+pyzmq==25.0.2
+qtconsole==5.4.2
+QtPy==2.3.1
+rfc3339-validator==0.1.4
+rfc3986-validator==0.1.1
+scipy==1.10.1
+Send2Trash==1.8.2
+six==1.16.0
+sniffio==1.3.0
+soupsieve==2.4.1
+stack-data==0.6.2
+sympy==1.11.1
+terminado==0.17.1
+tinycss2==1.2.1
+tornado==6.3.1
+traitlets==5.9.0
+tzdata==2023.3
+uri-template==1.2.0
+wcwidth==0.2.6
+webcolors==1.13
+webencodings==0.5.1
+websocket-client==1.5.1
+widgetsnbextension==4.0.7
--- a/script_install.sh
+++ b/script_install.sh
@ -1,21 +1,9 @@
-#!/bin/bash
+python3 -m venv venv
+source venv/bin/activate

-export WORKSPACE=$(pwd)
-rm -r ~/.cache/pip
-
-# gfortran
-
-sudo apt install build-essential
-sudo apt install gfortran
-gsettings set org.gnome.nautilus.preferences default-folder-viewer 'list-view'
-
-pip3 install --user numpy scipy matplotlib ipython jupyter pandas sympy nose mpi4py
-
-# install open mpi latest version 
-
-sudo apt install openmpi-bin
+export PETSC_CONFIGURE_OPTIONS="--download-fblaslapack --download-chaco --download-hdf5"
+pip3 install -r requirements.txt

-# setup petsc4py
+./script_fortran.sh

-export PETSC_CONFIGURE_OPTIONS="--download-fblaslapack --download-chaco --download-hdf5"
-pip3 install petsc petsc4py
+cd fftma_module/gen && python3 setup.py install
--- a/script_install_py2.sh
+++ b/script_install_py2.sh
@ -1,71 +0,0 @@
-#!/bin/bash
-
-export WORKSPACE=$(pwd)
-
-# gfortran
-
-sudo apt install build-essential
-sudo apt install gfortran
-gsettings set org.gnome.nautilus.preferences default-folder-viewer 'list-view'
-
-# install open mpi 2.1.1
-
-curl https://download.open-mpi.org/release/open-mpi/v2.1/openmpi-2.1.1.tar.bz2  --output openmpi-2.1.1.tar.bz2
-tar -jxf openmpi-2.1.1.tar.bz2
-cd openmpi-2.1.1
-
-./configure --prefix=$HOME/opt/openmpi
-make all
-make install
-
-echo "export PATH=\$PATH:\$HOME/opt/openmpi/bin" >> $HOME/.bashrc
-
-echo "export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:\$HOME/opt/openmpi/lib" >> $HOME/.bashrc
-
-source ~/.$1rc
-
-cd ..
-
-# install miniconda
-
-curl https://repo.anaconda.com/miniconda/Miniconda3-py39_4.10.3-Linux-x86_64.sh --output Miniconda3-py39_4.10.3-Linux-x86_64.sh
-
-bash Miniconda3-py39_4.10.3-Linux-x86_64.sh -b
-
-source ~/.$1rc
-
-# create python 2.7 environment
-
-conda init $1
-
-source ~/.$1rc
-
-conda create -n py2_7 python=2.7
-conda activate py2_7
-
-pip install --user numpy scipy matplotlib ipython jupyter pandas sympy nose
-
-# setup petsc
-
-git clone https://gitlab.com/petsc/petsc 
-
-cd petsc
-
-git checkout maint-3.8
-./configure --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90  --download-fblaslapack --with-debugging=0 COPTFLAGS='-O3 -march=native -mtune=native' CXXOPTFLAGS='-O3 -march=native -mtune=native' FOPTFLAGS='-O3 -march=native -mtune=native'
-
-make PETSC_DIR=$WORKSPACE/petsc PETSC_ARCH=arch-linux2-c-opt all
-
-make PETSC_DIR=$WORKSPACE/petsc PETSC_ARCH=arch-linux-c-opt check
-
-cd ..
-
-# setup petsc4py
-
-git clone https://Icolecchio@bitbucket.org/petsc/petsc4py.git
-cd petsc4py
-git checkout maint-3.8
-export PETSC_DIR=$WORKSPACE/petsc
-python setup.py build
-python setup.py install --user
-python setup.py test