Usar Process para correr realization

+ Makefile con posibilidad de correr en slurm

.gitignore

@@ -17,8 +17,3 @@ fftma_module/gen/build/
 tools/connec/conec2d
 tools/connec/conec3d
 utilities/__pycache__/
-fftma_module/gen/log_*
-fftma_module/gen/out*.npy
-.ipynb_checkpoints/analysis-checkpoint.ipynb
-fftma_module/gen/.ipynb_checkpoints/
-__pycache__/

Makefile

@@ -1,25 +1,23 @@
 
 install: 
-	. ./script_install.sh
+	bash ./script_install.sh
 
-run: binaries
+run: 
-	./run_simulation.sh
+	bash ./run_simulation.sh
 
-fftma:
-	cd fftma_module/gen && python3 setup.py install --user
 
-binaries: 
+test: 
-	./script_fortran.sh
-
-test: binaries fftma
 	cd tests/integration && python3 -m unittest test.py
 
-perf: binaries
+perf:
 	cd tests/performance && python3 generation.py
 	cd tests/performance && python3 connectivity.py
 
-test-gen: fftma
+run-slurm: 
-	cd tests/stages/generation && python3 -m unittest test.py
+	sbatch run-simulation-slurm
+
+test-slurm: 
+	sbatch run-test-slurm
 
-time-gen: fftma
+perf-slurm:
-	cd tests/performance/generation && python3 time.py $(N)
+	sbatch run-perf-slurm

README-LOCAL.md

@@ -0,0 +1,73 @@
+# Paralelización de simulación de permeabilidad
+
+## Clonar este repositorio
+
+```
+# Por HTTPS
+git clone https://git.csc.gob.ar/ssantisi/simulacion-permeabilidad.git
+# Por SSH
+git clone git@git.csc.gob.ar:ssantisi/simulacion-permeabilidad.git
+```
+
+Entrar a la carpeta del proyecto
+
+```
+cd simulacion-permeabilidad
+```
+
+## Instalación de las librerías (Python 3) 
+
+Como requisitos previos a la instalación hace falta tener:
+
+ * `python3`
+ * `python3-pip`
+ * `gfortran`
+ * `gcc`
+ * `build-essentials`
+
+```
+make install
+```
+
+El instalador genera un entorno virtual en `venv`.
+
+Para activar el entorno virtual:
+
+```
+source venv/bin/activate
+```
+
+Para desactivarlo `deactivate`.
+
+
+## Correr la simulación
+
+```
+make run
+```
+
+## Correr los casos de prueba
+
+```
+make test
+```
+
+## Correr las pruebas de performance
+
+```
+make perf
+```
+
+## Branches de github
+
+Explicacion sobre las branches que quedaron en github para entender cuales usar:
+
+- `main` -> solo la migracion a python3 sin ninguna cambio sobre el modulo de FFTMA (sin mejoras)
+
+- `improvement_NOMBRE` -> branch con el `NOMBRE` de la mejora que esta explicado que hace cada una en el analisis
+
+donde la primera es `remove_generate_array` y la ultima es `multiple_buffers`
+
+- `improvement_NOMBRE-logs` -> misma branch de mejora pero agregando informacion de logs que se utilizo para realizar los analisis y no deberian utilizarse porque degradan la performance considerablemente.
+
+- `migrate_fortran` -> una branch donde se trato de migrar de fortran a C pero quedo inconcluso el trabajo y no se continuo.

README-TUPAC.md

@@ -0,0 +1,126 @@
+# Paralelización de simulación de permeabilidad en Cluster HPC (SLURM)
+
+## ANTES DEL PRIMER USO
+
+Seguir los siguientes pasos del tutorial:
+
+1. Clonar este repositorio
+2. Entrar al entorno NIX
+3. Generar entorno Python para la simulación
+
+## USO HABITUAL:
+
+Habiendo completado las instrucciones previas al primer uso:
+
+1. Entrar al entorno NIX
+2. Activar el entorno python
+3. Ejecutar las siimulaciones de interés
+
+## Clonar este repositorio
+
+```
+# Por HTTPS
+git clone https://git.csc.gob.ar/ssantisi/simulacion-permeabilidad.git
+# Por SSH
+git clone git@git.csc.gob.ar:ssantisi/simulacion-permeabilidad.git
+```
+
+Entrar a la carpeta del proyecto
+
+```
+cd simulacion-permeabilidad
+```
+
+## Entrar al entorno NIX
+
+
+```
+nix-shell
+```
+
+Para más info ver el archivo `shell.nix`. 
+
+## Generar entorno Python para la simulación
+
+Los siguentes requisitos ya vienen provistos por `nix-shell`:
+
+ * `python3`
+ * `python3-pip`
+ * `gfortran`
+ * `gcc`
+ * `build-essentials`
+
+```
+make install
+```
+
+El instalador genera un entorno virtual en `venv`.
+
+## Activar el entorno python
+
+Para activar el entorno virtual (LUEGO DE HABER ACTIVADO EL ENTORNO NIX):
+
+```
+source venv/bin/activate
+```
+
+Para desactivarlo `deactivate`.
+
+## Correr simulaciones de interés
+
+Los siguientes comandos encolan trabajos en el cluster, que correrán tan pronto como les toque su lugar en la cola de trabajos.
+Se puede monitorear el estado de el/los trabajos encolados con `squeue`.
+Se puede cancelar un trabajo encolado con `scancel numero_de_trabajo`
+
+### Correr la simulación (en SLURM)
+
+Por defecto: 2 nodos, 32 tasks por nodo.
+Para cambiarlo editar archivo `run-simulation-slurm`.
+
+```
+make run-slurm
+```
+
+Una vez en ejecución, la salida se escribe a los siguientes archivos:
+* `simulation-nro-de-trabajo.out` la salida del trabajo.
+* `simulation-nro-de-trabajo.err` los errores del proceso
+
+### Correr los casos de prueba (en SLURM)
+
+Por defecto: 1 nodo, 64 cpus por nodo.
+Para cambiarlo editar archivo `run-tests-slurm`.
+
+```
+make test-slurm
+```
+
+Una vez en ejecución, la salida se escribe a los siguientes archivos:
+* `test-nro-de-trabajo.out` la salida del trabajo.
+* `test-nro-de-trabajo.err` los errores del proceso
+
+### Correr las pruebas de performance (en SLURM)
+
+Por defecto: 1 nodo, 64 cpus por nodo.
+Para cambiarlo editar archivo `run-perf-slurm`.
+
+```
+make perf-slurm
+```
+
+Una vez en ejecución, la salida se escribe a los siguientes archivos:
+* `perf-nro-de-trabajo.out` la salida del trabajo.
+* `perf-nro-de-trabajo.err` los errores del proceso
+
+## Branches de github
+
+Explicacion sobre las branches que quedaron en github para entender cuales usar:
+
+- `main` -> solo la migracion a python3 sin ninguna cambio sobre el modulo de FFTMA (sin mejoras)
+
+- `improvement_NOMBRE` -> branch con el `NOMBRE` de la mejora que esta explicado que hace cada una en el analisis
+
+donde la primera es `remove_generate_array` y la ultima es `multiple_buffers`
+
+- `improvement_NOMBRE-logs` -> misma branch de mejora pero agregando informacion de logs que se utilizo para realizar los analisis y no deberian utilizarse porque degradan la performance considerablemente.
+
+- `migrate_fortran` -> una branch donde se trato de migrar de fortran a C pero quedo inconcluso el trabajo y no se continuo.

README.md

@@ -1,61 +1,9 @@
 # Paralelización de simulación de permeabilidad
 
-## Instalación de las librerías (Python 3)
+## Corrida en PC de escritorio/laptop
 
-```
+Ver archivo **README-LOCAL.md**.
-make install
-```
-
-## Generación de los binarios de conectividad
-
-```
-make binaries
-```
-
-## Correr la simulación
-
-```
-make run
-```
-
-## Pruebas de integración
-
-```
-make test
-```
-
-## Pruebas unitarias
-
-### Generacion
-
-```
-make test-gen
-```
-
-## Correr las pruebas de performance
-
-```
-make perf
-```
-
-### Obtener tiempos de generacion
-
-```
-make time-gen N=<tamaño>
-```
-
-## Instalar el binario FFTMA
-
-```
-make fftma
-```
-
-## Instalación de las librerías (Python 2)
-
-El sistema actualmente se encuentra migrado a Python3 por lo que no se recomienda correr este script.
-
-```
-./script_install_py2.sh
-```
 
+## Corrida en cluster TUPAC
 
+Ver archivo **README-TUPAC.md**.

config.ini

@@ -1,44 +1,44 @@
 [General]
-simDir=prueba5
+simDir=output
 startJob=0
 [Iterables]
-p=[10,39,10]
+p=[10,39,15]
-seeds=[5462,1]
+seeds=[5462,2]
-lc=[16]
+lc=[4]
-connectivity=[1,2]
+connectivity=[1,2,3]
 variances=[1]
 
 [Generation]
-Nx = 64
+Nx = 16
-Ny = 64
+Ny = 16
-Nz = 1
+Nz = 16
 variogram_type=1
 binary = yes
 kh = 100
 kl = 0.01
-compute_lc = no
+compute_lc = yes
 lcBin=yes
 genera=yes
 
 
 [Connectivity]
-keep_aspect= no
+keep_aspect= yes
 block_size = 4
 indicators_MinBlockSize =4 
 Max_sample_size = 12
 compGconec= 1
-conec=no
+conec=yes
 
 
 [Solver]
 num_of_cores = 1
 ref = 2
-solve = no
+solve = yes
 rtol = 1e-4
 
 [K-Postprocess]
 MinBlockSize =1
 Max_sample_size = 4
-kperm=no
+kperm=yes
-postprocess=no
+postprocess=yes
 SaveVfield=yes

env.sh

@@ -1,5 +0,0 @@
-#!/bin/bash
-
-source ~/miniconda3/etc/profile.d/conda.sh
-conda activate py2_7
-python --version

fftma_module/gen/FFTMA_TEST.py

@@ -0,0 +1,36 @@
+from FFTMA import gen
+from refine import refine as ref
+import numpy as np
+from random import randint as rdi
+
+N=128
+
+for i in range(1):
+	nx, ny, nz = N,N,N
+	dx, dy, dz = 1.0, 1.0, 1.0
+	seed= 1548762 #rdi(10000,99999)
+	var=1
+	vario=2
+	alpha=1
+	lcx=2
+	lcy=4
+	lcz=16
+	ap1x=1
+	ap1y=0
+	ap1z=0
+	ap2x=0
+	ap2y=1
+	ap2z=0
+
+	v1 = (var, vario, alpha, lcx, lcy, lcz, ap1x, ap1y, ap1z, ap2x, ap2y, ap2z)
+	variograms = [v1]
+
+	mean=15.3245987
+	variance=3.5682389
+	typ=1
+
+	k=gen(nx, ny, nz, dx, dy, dz, seed, variograms, mean, variance, typ)
+
+	np.save("out"+str(i)+".npy",ref(k,4,4,4))
+
+

fftma_module/gen/Interface/condor.h

@@ -0,0 +1,442 @@
+#include "geostat.h"
+
+#ifndef _CONDOR_H_
+#define _CONDOR_H_
+
+
+
+/*=======================================================*/
+/*FUNCTIONS*/
+/*---------*/
+
+
+/*addstat                                                 */
+/*adds mean and variance effects to the N(0,1) realization*/
+/*input:                                                  */
+/*realin: structure defining a realization -              */
+/*        must have zero mean and unit variance           */
+/*stat: structure defining the mean and variance          */
+/*output:                                                 */
+/*realout: structure defining a realization -             */
+void addstat(struct realization_mod *realin,struct statistic_mod stat ,struct realization_mod *realout);
+
+
+/*condit                                             */
+/*conditioning of a Gaussian realization using       */
+/*the primal kriging approach                        */
+/*inversion method = CONJUGATE GRADIENTS             */
+/*NB: The realization and the well data are          */
+/*reduced to the standard Gaussian N(0,1)            */
+/*INPUT                                              */
+/*k: measurement type                                */
+/*well: structure with the well data                 */
+/*variogram: structure describing the variogram model*/
+/*realin: structure defining the input realization   */
+/*grid: structure defining the grid                  */
+/*OUTPUT                                             */
+/*realout: structure defining the output realization */
+void condit(int k,struct welldata_mod well,struct vario_mod variogram,struct grid_mod grid,struct realization_mod *realin,struct realization_mod *realout);
+
+
+/*d_kriging                                          */
+/*interpolation from ponctual data with simple dual  */
+/*kriging. d_kriging is used to interpolate standard */
+/*Gaussian data only                                 */
+/*inversion method = CONJUGATE GRADIENTS             */
+/*INPUT                                              */
+/*k: measurement type                                */
+/*well: structure with the well data                 */
+/*variogram: structure describing the variogram model*/
+/*grid: structure defining the grid                  */
+/*OUTPUT                                             */
+/*realout: structure defining the output realization */
+void d_kriging(int k,struct welldata_mod well,struct vario_mod variogram,struct grid_mod grid,struct realization_mod *realout);
+
+
+/*dual_condit                                        */
+/*conditioning of a Gaussian realization using       */
+/*the dual kriging approach                          */
+/*inversion method = CONJUGATE GRADIENTS             */
+/*NB: The realization and the well data are          */
+/*reduced to the standard Gaussian N(0,1)            */
+/*INPUT                                              */
+/*k: measurement type                                */
+/*well: structure with the well data                 */
+/*variogram: structure describing the variogram model*/
+/*realin: structure defining the input realization   */
+/*OUTPUT                                             */
+/*realout: structure defining the output realization */
+void dual_condit(int k,struct welldata_mod well,struct vario_mod variogram,struct grid_mod grid,struct realization_mod *realin,struct realization_mod *realout);
+
+
+/*dual_condit_gen                                    */
+/*conditioning of a Gaussian realization using       */
+/*the dual kriging approach                          */
+/*considered cases : Gaussian data                   */
+/*                   Uniform data                    */
+/*                   Log                             */
+/*inversion method = CONJUGATE GRADIENTS             */
+/*INPUT                                              */
+/*k: measurement type                                */
+/*wellin: structure with the well data               */
+/*variogram: structure describing the variogram model*/
+/*realin: structure defining the input realization   */
+/*stat : structure defining the statistical data     */
+/*OUTPUT                                             */
+/*realout: structure defining the output realization */
+
+void dual_condit_gen(int k,struct welldata_mod wellin,struct vario_mod variogram,struct grid_mod grid,struct realization_mod *realin,struct statistic_mod stat, struct realization_mod *realout);
+
+
+
+/*FAST FOURIER TRANSFORM MOVING AVERAGE METHOD */
+/*Turns a Gaussian white noise vector into a   */
+/*spatially correlated vector                  */
+/*input:                                       */
+/*variogram: structure defining the variogram  */
+/*           model                             */
+/*grid: structure defining the grid            */
+/*n: vector with the number of cells along the */
+/*   X, Y and Z axes for the underlying grid   */
+/*   i = [0 1 2]                               */
+/*   --> 0 0 0        : n will be computed and */
+/*   updated as output                         */
+/*   --> nx ny nz: these dimensions are used   */
+/*realin: structure defining a realization -   */
+/*        must be a Gaussian white noise       */
+/*output:                                      */
+/*realout: structure defining a realization -  */
+void FFTMA(struct vario_mod variogram,struct grid_mod grid,int n[3],struct realization_mod *realin,struct realization_mod *realout);
+
+
+/*FAST FOURIER TRANSFORM MOVING AVERAGE METHOD       */
+/*PLUS GRADIENT CALCULATIONS - GRADIENTS ARE         */
+/*CALCULATED FOR THE GRADUAL DEFORMATION PARAMETERS  */
+/*                                                   */
+/*INPUT:                                             */
+/*-------                                            */
+/*variogram: structure defining the variogram        */
+/*           model                                   */
+/*grid: structure defining the grid                  */
+/*n: vector with the number of cells along the       */
+/*   X, Y and Z axes for the underlying grid         */
+/*   i = [0 1 2]                                     */
+/*   --> 0 0 0        : n will be computed and       */
+/*   updated as output                               */
+/*   --> nx ny nz: these dimensions are used         */
+/*realin: structure defining a realization -         */
+/*        must be a Gaussian white noise             */
+/*DZoverDRHO: gradients calculated durin the gradual */
+/*            deformation process                    */
+/*                                                   */
+/*OUTPUT:                                            */
+/*-------                                            */
+/*realout: structure defining a realization -        */
+/*DYoverDRHO : structure with the output gradients   */
+void FFTMA_gradient(struct vario_mod variogram,struct grid_mod grid,int n[3],struct realization_mod *realin,struct gradients_mod *DZoverDRHO,struct realization_mod *realout,struct gradients_mod *DYoverDRHO);
+
+
+/* GENERATION OF A GAUSSIAN WHITE NOISE VECTOR    */
+/*input:                                          */
+/* seed: seed                                     */
+/* n: number of components in the vector          */
+/*output:                                         */ 
+/* realization: structure defining the realization*/
+void generate(long *seed, int n, struct realization_mod *realization);
+
+void ikrig(int option, struct statfacies_mod facies, int kk,struct welldata_mod data, struct variotable_mod variogram,struct grid_mod grid,float *krigout);
+
+
+/*kriging                                            */
+/*interpolation from ponctual data with simple       */
+/*kriging. kriging is used to interpolate standard   */
+/*Gaussian data only                                 */
+/*inversion method = CONJUGATE GRADIENTS             */
+/*INPUT                                              */
+/*k: measurement type                                */
+/*well: structure with the well data                 */
+/*variogram: structure describing the variogram model*/
+/*grid: structure defining the grid                  */
+/*OUTPUT                                             */
+/*realout: structure defining the output realization */
+void kriging(int k,struct welldata_mod data,struct vario_mod variogram,struct grid_mod grid,struct realization_mod *realout);
+
+
+/*CHOLESKY SIMULATION TECHNIQUE - LUSIM              */
+/*appropriate for regular grids and small number     */
+/*of points                                          */
+/*input:                                             */
+/*variogram: structure defining the variogram model  */
+/*realin: structure defining a realization -         */
+/*        must be a Gaussian white noise             */
+/*output:                                            */
+/*realout: structure defining a realization -        */
+void LUSIM(struct vario_mod variogram,struct grid_mod grid,struct realization_mod *realin,struct realization_mod *realout);
+
+
+void nor2any(struct cdf_mod *pcumulf,struct realization_mod *realin,struct realization_mod *realout);
+
+/*TURNS NORMAL NUMBERS INTO LOGNORMAL NUMBERS   */
+/*input:                                        */
+/*realin: structure defining a realization -    */
+/*        normal numbers                        */
+/*typelog: --> 3: lognormal (natural)           */
+/*         --> 4: lognormal (log10)             */
+/*output:                                       */
+/*realout: structure defining a realization -   */
+/*         lognormal numbers                    */
+void nor2log(struct realization_mod *realin, int typelog, struct realization_mod *realout);
+
+
+/*TURNS NORMAL NUMBERS INTO UNIFORM NUMBERS     */
+/*input:                                        */
+/*realin: structure defining a realization -    */
+/*        must have zero mean and unit variance */
+/*output:                                       */
+/*realout: structure defining a realization -   */
+/*         uniform numbers                      */
+void nor2unif(struct realization_mod *realin,struct realization_mod *realout);
+
+
+/*o_kriging                                              */
+/*interpolation from ponctual data with ordinary kriging */
+/*o_kriging is used to interpolate standard Gaussian data*/
+/*only                                                   */
+/*INPUT                                                  */
+/*k: measurement type or rank                            */
+/*variogram: structure describing the variogram model    */
+/*data: structure with the well data                     */
+/*grid: structure defining the grid                      */
+/*OUTPUT                                                 */
+/*realout: structure defining the kriged realization     */
+void o_kriging(int k,struct vario_mod variogram,struct welldata_mod data,struct grid_mod grid,struct realization_mod *realout);
+
+
+/*od_kriging                                         */
+/*interpolation from ponctual data with ordinary dual*/
+/*kriging. od_kriging is used to interpolate         */
+/*Gaussian data only                                 */
+/*inversion method = CONJUGATE GRADIENTS             */
+/*INPUT                                              */
+/*k: measurement type                                */
+/*well: structure with the well data                 */
+/*variogram: structure describing the variogram model*/
+/*grid: structure defining the grid                  */
+/*OUTPUT                                             */
+/*realout: structure defining the output realization */
+void od_kriging(int k,struct welldata_mod well,struct vario_mod variogram,struct grid_mod grid,struct realization_mod *realout);
+
+
+/*PLURIGAUSSIAN METHOD                                    */
+/*Starting from   two independent Gaussian realizations Y1*/
+/*and Y2 with zero mean and unit variance, but possibly   */
+/*different variogram models, a categorial realization is */
+/*built.                                                  */
+/*Truncation is performed on the basis of a mask with the */
+/*x-axis associated to Y1 and the y-axis associated to Y2 */
+/*This truncation may be stationary or non stationary     */
+/*The mask consists of lines perpendicular to the Y1 and  */
+/*Y2 axes. They define rectangular subregions attributed  */
+/*to categories i = [1...ncat]                            */
+/*INPUT:                                                  */
+/*facies: structure defining the facies proportions in the*/
+/*        whole reservoir model                           */
+/*ineq: structure defining the mask for truncation        */
+/*Y1: first starting Gaussian realization                 */
+/*Y2: second starting realization - same length as Y1     */ 
+/*OUTPUT:                                                 */
+/*Y: output realization                                   */
+void plurigau(struct statfacies_mod facies,struct inequalities_mod ineq,struct realization_mod *Y1, struct realization_mod *Y2, struct realization_mod *Y);
+
+
+/*tr_kriging                                    */
+/*kriging with an external drift                */
+/*The trend is limited to a 2-term function     */
+/*m(u) = a0+a1y(u) where y(u) is a secondary    */
+/*external variable (e.g., seismic)             */
+/*INPUT:                                        */
+/*k: measurement type or rank                   */
+/*variogram: structure describing the variogram */
+/*           model                              */
+/*data: structure with the well data            */
+/*grid: structure defining the grid             */
+/*y: secondary external variable                */
+/*OUTPUT:                                       */
+/*realout: kriged realization                   */
+void tr_kriging(int k, struct vario_mod variogram,struct welldata_mod data,struct grid_mod grid,struct realization_mod *Y,struct realization_mod *realout);
+
+
+/*truncat                                      */
+/*TRUNCATES A STANDARD GAUSSIAN REALIZATION    */
+/*WITH THE TRUNCATED GAUSSIAN METHOD           */
+/*truncation may be stationary or nonstationary*/
+/*INPUT:                                       */
+/*facies: description of the facies proportions*/
+/*thresholds: may be an input if they have been*/
+/*            previously computed              */
+/*realin: structure defining a realization -   */
+/*        must be a standard normal            */
+/*OUTPUT:                                      */
+/*realout: structure defining a realization -  */
+/*thresholds: Gaussian thresholds corresponding*/
+/*            to the facies volume fractions if*/
+void truncat(struct statfacies_mod facies,struct realization_mod *realin,struct realization_mod *realout, struct statfacies_mod *thresholds);
+
+
+/*TURNS UNIFORM NUMBERS INTO NORMAL NUMBERS*/
+/*INPUT:                                        */
+/*realin: structure defining a realization -    */
+/*         uniform numbers                      */
+/*OUTPUT:                                       */
+/*realout: structure defining a realization -   */
+/*        must have zero mean and unit variance */
+void unif2nor(struct realization_mod *realin,struct realization_mod *realout);
+
+
+/*Wany2nor                                             */
+/*converts any kind of continuous data to Gaussian data*/
+/*INPUT:                                               */
+/*k: type of measurement                               */
+/*wellin: structure with the input well data           */
+/*seed: seed                                           */
+/*OUTPUT:                                              */
+/*wellout: structure with the output well data         */
+/*pcumulf: structure describing the experimental       */
+/*         cumulative distribution                     */
+void Wany2nor(int k, struct welldata_mod wellin, long *seed,struct welldata_mod *wellout, struct cdf_mod *pcumulf);
+
+
+/*Wfac2nor0                                             */
+/*turns the facies well measurements into Gaussian data */
+/*intervals only are respected - spatial variability is */
+/*disregarded                                           */
+/*USES vf2thres, deflimit,trungasdev                    */
+/*This step is required before performing kriging       */
+/*input:                                                */
+/*k: type measurement, may be 1,2,3 ... or ntype        */
+/*wellin: structure defining well data                  */
+/*        code = 5 --> facies                           */
+/*grid: structure defining the grid                     */
+/*facies: structure defining the facies proportions     */
+/*seed: seed                                            */
+/*output:                                               */
+/*wellout: structure defining well data - the kth vector*/
+/*of measures are converted to standard normal data     */  
+void Wfac2nor0(int k,struct grid_mod grid,struct welldata_mod wellin,struct statfacies_mod facies,long *seed,struct welldata_mod *wellout);
+
+
+/*Wfac2nor1                                             */
+/*turns the facies well measurements into Gaussian data */
+/*Proceeds in 2 steps                                   */
+/* 1- builds a realization Y = LZ (variability ensured) */
+/* 2- proposes successively local changes for Z to      */
+/*   respect the intervals-Metropoils-Hastings approach */
+/*input:                                                */
+/*k: type measurement, may be 1,2,3 ... or ntype        */
+/*variogram: structure defining the variogram model     */
+/*wellin: structure defining well data                  */
+/*        code = 5 --> facies                           */
+/*grid: structure defining the grid                     */
+/*facies: structure defining the facies proportions     */
+/*seed: seed                                            */
+/*output:                                               */
+/*wellout: structure defining well data - the kth vector*/
+/*of measures are converted to standard normal data     */
+void Wfac2nor1(int k,struct vario_mod variogram,struct grid_mod grid,struct welldata_mod wellin,struct statfacies_mod facies,long *seed,struct welldata_mod *wellout);
+
+
+/*Wfac2norPG0                                           */
+/*turns the facies well measurements into Gaussian data */
+/*intervals only are respected - spatial variability is */
+/*disregarded                                           */
+/*method developed for pluriGaussian realizations       */
+/*stationary and nonstationary truncation               */
+/*This step is required before performing kriging       */
+/*INPUT:                                                */
+/*k: type measurement, may be 1,2,3 ... or ntype        */
+/*wellin: structure defining well data                  */
+/*        code = 5 --> facies                           */
+/*grid: structure defining the grid                     */
+/*facies: structure defining the facies proportions     */
+/*seed: seed                                            */
+/*idreal: identification of the starting realization    */
+/*        = 1 for realization 1                         */
+/*        = 2 for realization 2                         */
+/*ineq: structure defining the mask for truncation      */
+/*OUTPUT:                                               */
+/*wellout: structure defining well data - the kth vector*/
+/*of measures are converted to standard normal data     */
+void Wfac2norPG0(int k,struct inequalities_mod ineq,struct grid_mod grid,struct welldata_mod wellin,struct statfacies_mod facies,long *seed,int idreal,struct welldata_mod *wellout);
+
+
+/*Wfac2norPG1                                           */
+/*turns the facies well measurements into Gaussian data */
+/*Proceeds in 2 steps                                   */
+/* 1- builds a realization Y = LZ (variability ensured) */
+/* 2- proposes successively local changes for Z to      */
+/*   respect the intervals-Metropoils-Hastings approach */
+/*method developed for pluriGaussian realizations       */
+/*STATIONARY TRUNCATION                                 */
+/*INPUT:                                                */
+/*k: type measurement, may be 1,2,3 ... or ntype        */
+/*wellin: structure defining well data                  */
+/*        code = 5 --> facies                           */
+/*grid: structure defining the grid                     */
+/*facies: structure defining the facies proportions     */
+/*seed: seed                                            */
+/*ineq: structure describing the truncation mask        */
+/*variogram1: structure describing the variogram model  */
+/*           for realization Y1                         */
+/*variogram2: structure describing the variogram model  */
+/*           for realization Y2                         */
+/*ineq: structure defining the mask for truncation      */
+/*OUTPUT:                                               */
+/*wellout1: structure with converted well data for      */
+/*realization 1 - the kth vector                        */
+/*wellout2: structure with converted well data for      */
+/*realization 2 - the kth vector                        */
+void Wfac2norPG1(int k,struct inequalities_mod ineq,struct vario_mod variogram1,struct vario_mod variogram2,struct grid_mod grid,struct welldata_mod wellin,struct statfacies_mod facies,long *seed,struct welldata_mod *wellout1,struct welldata_mod *wellout2);
+
+
+/*Wlog2nor                                              */
+/*turns the log well measurements into std Gaussian data*/
+/*This step is required before performing kriging       */
+/*input:                                                */
+/*k: type measurement, may be 1,2,3 ... or ntype        */
+/*wellin: structure defining well data                  */
+/*        code = 3 --> natural log                      */
+/*        code = 4 --> logarithm 10                     */
+/*grid: structure defining the grid                     */
+/*stat: structure defining the statistics               */
+/*output:                                               */
+/*wellout: structure defining well data - the kth vector*/
+/*of measures are converted to standard normal data     */    
+void Wlog2nor(int k, struct welldata_mod wellin,struct grid_mod grid,struct statistic_mod stat,struct welldata_mod *wellout);
+
+
+/*Wnor2nor                                              */
+/*converts Well Normal numbers to the standard Gaussian */ 
+/*input:                                                */
+/*k: type measurement, may be 1,2,3 ... or ntype        */
+/*wellin: structure defining well data                  */
+/*grid: structure defining the grid                     */
+/*stat: structure defining the statistics               */
+/*output:                                               */
+/*wellout: structure defining well data - the kth vector*/
+/*of measures are converted to standard normal data     */      
+void Wnor2nor(int k, struct welldata_mod wellin,struct grid_mod grid,struct statistic_mod stat,struct welldata_mod *wellout);
+
+
+/*Wunif2nor                                             */
+/*converts Well uniform numbers to the standard Gaussian*/ 
+/*input:                                                */
+/*k: type measurement, may be 1,2,3 ... or ntype        */
+/*wellin: structure defining well data                  */
+/*output:                                               */
+/*wellout: structure defining well data - the kth vector*/
+/*of measures are converted to standard normal data     */ 
+void Wunif2nor(int k, struct welldata_mod wellin,struct welldata_mod *wellout);
+
+
+
+#endif // define _CONDOR_H_

fftma_module/gen/Interface/genlib.h

@@ -0,0 +1,163 @@
+/*
+ * File: genlib.h
+ * Version: 1.0
+ * Last modified on Fri Jul 15 15:45:52 1994 by eroberts
+ * -----------------------------------------------------
+ * This file contains several definitions that form the
+ * core of a general-purpose ANSI C library developed by Eric
+ * Roberts.  The goal of this library is to provide a basic
+ * set of tools and conventions that increase the readability
+ * of C programs, particularly as they are used in a teaching
+ * environment.
+ *
+ * The basic definitions provided by genlib.h are:
+ *
+ *    1.  Declarations for several new "primitive" types
+ *        (most importantly bool and string) that are
+ *        used throughout the other libraries and
+ *        applications as fundamental types.
+ *
+ *    2.  A new set of functions for memory allocation.
+ *
+ *    3.  A function for error handling.
+ */
+
+#ifndef _genlib_h
+#define _genlib_h
+
+#include <stdio.h>
+#include <stdlib.h>
+#include <stddef.h>
+
+/* Section 1 -- Define new "primitive" types */
+
+/*
+ * Type: bool
+ * ----------
+ * This type has two values, FALSE and TRUE, which are equal to 0
+ * and 1, respectively.  Most of the advantage of defining this type
+ * comes from readability because it allows the programmer to
+ * provide documentation that a variable will take on only one of
+ * these two values.  Designing a portable representation, however,
+ * is surprisingly hard, because many libraries and some compilers
+ * define these names.  The definitions are usually compatible but
+ * may still be flagged as errors.
+ */
+
+#ifdef THINK_C
+   typedef int bool;
+#else
+#  ifdef TRUE
+#    ifndef bool
+#      define bool int
+#    endif
+#  else
+#    ifdef bool
+#      define FALSE 0
+#      define TRUE 1
+#    else
+       typedef enum {FALSE, TRUE} bool;
+#    endif
+#  endif
+#endif
+
+/*
+ * Type: string
+ * ------------
+ * The type string is identical to the type char *, which is
+ * traditionally used in C programs.  The main point of defining a
+ * new type is to improve program readability.   At the abstraction
+ * levels at which the type string is used, it is usually not
+ * important to take the string apart into its component characters.
+ * Declaring it as a string emphasizes this atomicity.
+ */
+
+typedef char *string;
+
+/*
+ * Constant: UNDEFINED
+ * -------------------
+ * Besides NULL, the only other constant of pointer type is
+ * UNDEFINED, which is used in certain packages as a special
+ * sentinel to indicate an undefined pointer value.  In many
+ * such contexts, NULL is a legitimate data value and is
+ * therefore inappropriate as a sentinel.
+ */
+
+#define UNDEFINED ((void *) undefined_object)
+
+extern char undefined_object[];
+
+/* Section 2 -- Memory allocation */
+
+/*
+ * General notes:
+ * --------------
+ * These functions provide a common interface for memory
+ * allocation.  All functions in the library that allocate
+ * memory do so using GetBlock and FreeBlock.  Even though
+ * the ANSI standard defines malloc and free for the same
+ * purpose, using GetBlock and FreeBlock provides greater
+ * compatibility with non-ANSI implementations, automatic
+ * out-of-memory error detection, and the possibility of
+ * substituting a garbage-collecting allocator.
+ */
+
+/*
+ * Function: GetBlock
+ * Usage: ptr = (type) GetBlock(nbytes);
+ * -------------------------------------
+ * GetBlock allocates a block of memory of the given size.  If
+ * no memory is available, GetBlock generates an error.
+ */
+
+void *GetBlock(size_t nbytes);
+
+/*
+ * Function: FreeBlock
+ * Usage: FreeBlock(ptr);
+ * ----------------------
+ * FreeBlock frees the memory associated with ptr, which must
+ * have been allocated using GetBlock, New, or NewArray.
+ */
+
+void FreeBlock(void *ptr);
+
+/*
+ * Macro: New
+ * Usage: p = New(pointer-type);
+ * -----------------------------
+ * The New pseudofunction allocates enough space to hold an
+ * object of the type to which pointer-type points and returns
+ * a pointer to the newly allocated pointer.  Note that
+ * "New" is different from the "new" operator used in C++;
+ * the former takes a pointer type and the latter takes the
+ * target type.
+ */
+
+#define New(type) ((type) GetBlock(sizeof *((type) NULL)))
+
+/*
+ * Macro: NewArray
+ * Usage: p = NewArray(n, element-type);
+ * -------------------------------------
+ * NewArray allocates enough space to hold an array of n
+ * values of the specified element type.
+ */
+
+#define NewArray(n, type) ((type *) GetBlock((n) * sizeof(type)))
+
+/* Section 3 -- Basic error handling */
+
+/*
+ * Function: Error
+ * Usage: Error(msg, ...)
+ * ----------------------
+ * Error generates an error string, expanding % constructions
+ * appearing in the error message string just as printf does.
+ * After printing the error message, the program terminates.
+ */
+
+void Error(string msg, ...);
+
+#endif

fftma_module/gen/Interface/geostat.h

@@ -0,0 +1,690 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdarg.h>
+
+
+#ifndef _GEOSTAT_H
+#define _GEOSTAT_H
+
+#define NTAB 32
+
+/* Modified january, the 22th 2004 */
+/* from float to double */
+
+/* List of structures: */
+/* ------------------- */
+
+/* vario_mod */
+/* variotable_mod*/
+/* grid_mod */
+/* welldata_mod */
+/* statfacies_mod */
+/* inequalities_mod */
+/* statistic_mod */
+/* grad_mod */
+/* gradients_mod */
+/* cdf_mod */
+/* realization_mod */
+
+
+/* List of functions: */
+/* ------------------ */
+
+/* axes, cardsin, choldc, coordinates           */
+/* covariance, cov_matrix, cov_value,           */
+/* cubic, cutspectr, deflimit, dual_kri         */
+/* exponential, fourt, funtrun1, G, gammf       */
+/* gammln, gammp, gasdev, gaussian, gcf,        */
+/* gen_cov_matrix, Ginv, gradual, cgrid,        */ 
+/* gser, invtrun1, krig_stat, length,           */
+/* LtimeZ, mat_vec, maxfactor, metrop, norm     */
+/* normal, nugget, power, ran2, scal_vect,      */
+/* solve3, sort, spherical, stable, statlog2nor */
+/* test_fract, trun1, trungasdev,vec_vec,       */
+/* vf2gthres,polint    */
+
+
+
+
+/*STRUCTURES*/
+/*----------*/
+/*variogram                                            */
+/*Nvario: number of combined variogram models          */
+/*vario: model of variogram per variogram model        */
+/*       1 --> exponential                             */
+/*       2 --> gaussian                                */
+/*       3 --> spherical                               */
+/*       4 --> cardsin                                 */
+/*       5 --> stable                                  */
+/*       6 --> gamma                                   */
+/*       7 --> cubic                                   */
+/*       8 --> nugget                                  */
+/*       9 --> power                                   */
+/*alpha: exponent for the stable and gamma variogram   */
+/*       per variogram model                           */
+/*ap: anisotropy axes per variogram model              */
+/*scf: correlation lengths per variogram model         */
+/*var: normalized variance per variogram model(sum = 1)*/
+struct vario_mod {
+  int Nvario;
+  int *vario;
+  double *alpha;
+  double *ap;
+  double *scf;
+  double *var;
+};
+
+
+
+/*variogram table                                      */
+/*Nvario: number of combined variogram models          */
+/*vario: model of variogram per variogram model        */
+/*       1 --> exponential                             */
+/*       2 --> gaussian                                */
+/*       3 --> spherical                               */
+/*       4 --> cardsin                                 */
+/*       5 --> stable                                  */
+/*       6 --> gamma                                   */
+/*       7 --> cubic                                   */
+/*       8 --> nugget                                  */
+/*       9 --> power                                   */
+/*alpha: exponent for the stable and gamma variogram   */
+/*       per variogram model                           */
+/*ap: anisotropy axes per variogram model              */
+/*scf: correlation lengths per variogram model         */
+/*var: normalized variance per variogram model(sum = 1)*/
+struct variotable_mod {
+  int number_of_variograms;
+  int *Nvario;
+  int *vario;
+  float *alpha;
+  float *ap;
+  float *scf;
+  float *var;
+};
+
+
+
+
+
+
+/*grid                                     */
+/*NX: number of gridblocks along the X axis*/
+/*NY: number of gridblocks along the Y axis*/
+/*NZ: number of gridblocks along the Z axis*/
+/*DX: gridblock length along the X axis    */
+/*DY: gridblock length along the Y axis    */
+/*DZ: gridblock length along the Z axis    */
+/*Xo: X-cell number of the origin cell     */
+/*Yo: Y-cell number of the origin cell     */
+/*Zo: Z-cell number of the origin cell     */
+struct grid_mod {
+  int NX, NY, NZ;
+  double DX,DY,DZ;
+  double Xo,Yo,Zo;
+};
+
+
+/*well data                                               */
+/*nwell: number of wells                                  */
+/*n: number of measurement points per well                */
+/*   i = [0...nwell-1]                                    */
+/*ntype: number of measurement types                      */
+/*code: status of the measurements i=[0...ntype-1]        */
+/*      --> 0 : Gaussian white noise                      */
+/*      --> 1: standard Normal                            */
+/*      --> 2: non standard Normal                        */
+/*      --> 3: lognormal (neperien)                       */
+/*      --> 4: lognormal (log10)                          */
+/*      --> 5: facies                                     */
+/*      --> 6: uniform                                    */
+/*      --> 7: any                                        */
+/*x: X-coordinates of the measurements                    */
+/*   i = [0 ... n[0]-1 n[0] ... n[0]+n[1]-1...sum(n[k])-1]*/
+/*y: Y-coordinates of the measurements                    */
+/*   i = [0 ... n[0]-1 n[0] ... n[0]+n[1]-1...sum(n[k])-1]*/
+/*z: Z-coordinates of the measurements                    */
+/*   i = [0 ... n[0]-1 n[0] ... n[0]+n[1]-1...sum(n[k])-1]*/
+/*measure: values of the measurements                     */
+/*   same kind of indexation, but repeated per type of    */
+/*   measurement                                          */
+/*   type 1 :                                             */
+/*   i = [0 ... n[0]-1 n[0] ... n[0]+n[1]-1...sum(n[k])-1]*/
+/*   type 2 :                                             */
+/*   i=[sum(n[k])... sum(n[k])+n[0]-1 ... 2*(sum(n[k])-1)]*/
+struct welldata_mod {
+  int nwell;
+  int *n;
+  int ntype;
+  int *code;
+  float *x;
+  float *y;
+  float *z;
+  float *measure;
+};
+
+
+
+/*volume fractions for facies                     */
+/*ncat: number of facies                          */
+/*nblock: number of gridblocks with different     */
+/*        volume fractions                        */
+/*        = 1 --> stationary case                 */
+/*        = NX*NY*NZ --> nonstationary case       */
+/*vf: volume fractions for the first ncat-1 facies*/
+/*    i = [0...ncat-2]*nblock                     */
+struct statfacies_mod {
+  int ncat;
+  int nblock;
+  float *vf;
+};
+
+
+/*inequalities for truncated plurigaussian realizations*/
+/*only two basic realizations Y1 and Y2 are considered */
+/*Y1 and Y2 are independent                            */
+/*nsY1: number of unknown thresholds for Y1            */
+/*nsY2: number of unknown thresholds for Y2            */
+/*thresholds: vector with the thresholds and -10 and 10*/
+/*          the output values are the Gaussian         */
+/*          thresholds                                 */
+/*          i = [0 ... n+1], n = nsY1+nsY2             */
+/*          thresholds[n] = -10,thresholds[n+1] = 10   */
+/*          given at the beginning                     */
+/*address_sY1: successive upper and lower bounds for   */
+/*             the different facies for Y1             */
+/*             i = [0 ... 2*ncat-1]                    */
+/*             the values in address_sY1 are integers  */
+/*             ranging from 0 to n+1 with n = nsY1+nsY2*/
+/*address_sY2: successive upper and lower bounds for   */
+/*             the different facies for Y2             */
+/*             i = [0 ... 2*ncat-1]                    */
+/*             the values in address_sY2 are integers  */
+/*             ranging from 0 to n+1 with n = nsY1+nsY2*/
+struct inequalities_mod {
+  int nsY1;
+  int nsY2;
+  float *thresholds;
+  int *address_sY1;
+  int *address_sY2;
+};
+
+
+/*statistical data                                       */
+/*type --> 0 : normal                                    */
+/*     --> 1 : natural log                               */
+/*     --> 2 : log 10                                    */
+/*nblock_mean: number of gridblocks with different       */
+/*        means                                          */
+/*        = 1 --> stationary case                        */
+/*        = NX*NY*NZ --> nonstationary case              */
+/*mean: mean of the variable i = [0...nblock_mean]       */
+/* DHF CHANGE: FOR TYPE 1 AND TYPE 2, MEAN IS LOG MEAN ! */
+/*nblock_var: number of gridblocks with different        */
+/*        variances                                      */
+/*        = 1 --> stationary case                        */
+/*        = NX*NY*NZ --> nonstationary case              */
+/*variance: variance of the variable i = [0...nblock_var]*/
+/* DHF CHANGE: FOR TYPE 1 AND TYPE 2, VAR IS LOG VAR   ! */
+struct statistic_mod {
+  int type;
+  int nblock_mean;
+  double *mean;
+  int nblock_var;
+  double *variance;
+};
+
+
+/*gradual deformation parameters                      */
+/*Nadded: number of complementary realizations        */
+/*NZONES: number of subregions                        */
+/*rho: gradual deformation parameters                 */
+/*rho[NZONES*(0...Nadded)]                            */
+/*cellini[NZONES*(0...2)] lower cell bound for        */
+/*for subregions along axes X,Y,Z                     */
+/*cellfin[NZONES*(0...2)] upper cell bound for        */
+/*for subregions along axes X,Y,Z                     */
+struct grad_mod {
+  int Nadded, NZONES;
+  float *rho;
+  int *cellini, *cellfin;
+};
+
+
+/*gradient structures                                   */
+/*Nparam : number of parameters for which gradients are */
+/*         required                                     */
+/*Ncells : number of cells for which gradients are      */
+/*         calculated                                   */
+/*grad : vector with the calculated gradients           */
+/*       dimension = Nparam*Ncells                      */
+/*       this vector is organized as                    */
+/*       0 1...Ncells-1 for the first parameter followed*/
+/*       Ncells....2*Ncells-1 for the second parameter  */
+/*       and so on                                      */
+struct gradients_mod {
+  int Nparam,Ncells;
+  float *grad;
+};
+
+
+
+/*description of discretized cumulative distributions */
+/*n: number of points                                 */
+/*x: values along the x axis i = [0...n-1]            */
+/*fx: corresponding values for the cumulative         */
+/*    distribution i = [0...n-1]                      */
+struct cdf_mod {
+  int n;
+  float *x;
+  float *fx;
+};
+
+
+/*realization                                         */
+/*n: number of components                             */
+/*code: status of the realization                     */
+/*      --> 0 : Gaussian white noise                  */
+/*      --> 1: standard Normal                        */
+/*      --> 2: non standard Normal                    */
+/*      --> 3: lognormal (neperien)                   */
+/*      --> 4: lognormal (log10)                      */
+/*      --> 5: facies                                 */
+/*      --> 6: conditional standard Normal            */
+/*      --> 7: conditional non standard Normal        */
+/*      --> 8: conditional lognormal (neperien)       */
+/*      --> 9: conditional lognormal (log10)          */
+/*      --> 10: conditional facies                    */
+/*      --> 11: uniform numbers                       */
+/*      --> 12: conditional uniform numbers           */
+/*      --> 13: unconditional any type                */
+/*      --> 14: conditional any type                  */
+/*vector: realization vector i = [0...n-1]            */
+struct realization_mod {
+  int n;
+  int code;
+  double *vector;
+};
+
+/*=====================================================*/
+
+/*FUNCTIONS*/
+/*---------*/
+
+
+/*normalization of the anostropy axes                  */
+/*ap: anisotropy axes                                  */
+/*scf: correlation lengths                             */
+/* The returned normalized axes are in ap              */
+void axes(double *ap, double *scf, int N);
+
+
+/*cardsin covariance value for lag h*/
+double cardsin(double h);
+
+
+/*Cholesky decomposition of matrix C                    */
+/* C     : symetric positive-definite matrix recorded   */
+/*         (per raws) as a vector with only components  */
+/*         Cij so that j <= i, 0 <= i <= n              */
+/* n     : dimension of matrix Cij                      */
+/*                                                      */
+/* C is turned into the lower triangular cholesky matrix*/
+void choldc(double *C, int n);
+
+
+/*computes the coordinates of a given cell    */
+/*as numbers of cells along the X,Y and Z axes*/
+/*maille = i[0]+1+i[1]*NX+i[2]*NX*NY          */
+/*input:                                      */
+/*maille: number of the cell to identify      */
+/*grid: structure defining the grid           */
+/*output:                                     */
+/*i: vector with the coordinates              */
+void coordinates(int maille, int i[3],struct grid_mod grid);
+
+
+/*builds the sampled covariance function */
+/*dimensions are even                    */
+/*covar: covariance array, vector of size*/
+/*1+NX*NY*NZ, covar[0] is a dead cell    */
+/*variogram: structure defined above     */
+/*grid: structure defined above          */
+/*n: number of gridblocks along X,Y and Z*/
+void covariance(double *covar,struct vario_mod variogram, struct grid_mod grid, int n[3]);
+
+/*computation of the covariance matrix for the well data*/
+/*well coordinates are given as a number of cells       */
+/*The dimension of C is given by well.nwell             */
+/*C is recorded as a vector so that                     */
+/*C[k] = Cij with i = [0...nwell-1], j = [0...nwell-1]  */
+/*and k = j+i(i+1)/2                                    */
+/*variogram: structure defined above                    */
+/*well: structure defined above                         */
+/*grid: structure defined above                         */
+void cov_matrix(double *C, struct vario_mod variogram, struct welldata_mod well, struct grid_mod grid);
+
+
+/*calculation of the covariance value for a distance h */
+/*defined by i,j,k                                     */
+/*available variogram model:                           */
+/* 1 -> exponential                                    */
+/* 2 -> gaussian                                       */
+/* 3 -> spherical                                      */
+/* 4 -> cardsin                                        */
+/* 5 -> stable                                         */
+/* 6 -> gamma                                          */
+/* 7 -> cubic                                          */
+/* 8 -> nugget                                         */
+/* 9 -> power                                          */
+/*variogram: variogram with the structure defined above*/
+/*di: distance along the X axis                        */
+/*dj: distance along the Y axis                        */
+/*dk: distance along the Z axis                        */
+/* The returned value is the computed covariance value */
+double cov_value(struct vario_mod variogram,double di,double dj,double dk);
+
+/*cubic covariance value for lag h*/
+double cubic(double h);
+
+
+/*truncation of the power spectrum to remove     */
+/*high frequencies - isotropic case              */
+/*covar: power spectrum                          */
+/*kx: number of cells to save along the x-axis   */
+/*ky: number of cells to save along the y-axis   */
+/*kz: number of cells to save along the z-axis   */
+/*n[3]: number of cells along the X, Y and Z axes*/
+void cutspectr(float *covar, int kx, int ky, int kz, int n[3]);
+
+
+/*defines the threshold interval for a facies x*/
+/*lim_inf: lower bound                         */
+/*lim_sup: upper bound                         */
+/*x: facies                                    */
+/*thresholds: Gaussian threshold vector        */
+/*facies: structure defined above              */
+/*nblock: gridcell number of point x           */
+void deflimit(double *plim_inf, double *plim_sup, float x, float *thresholds, struct statfacies_mod facies,int nblock);
+
+
+/*kriges the realization considering weights           */
+/*realin: input realization                            */
+/*variogram: structure defining the variogram          */
+/*k: type of measure                                   */
+/*well: structure defining the well data               */
+/*grid: structure defined above                        */
+/*D: weight vector of length Ndata, Di, i = 0...Ndata-1*/
+/*The kriged realization is stored in realout          */
+void dual_kri(struct realization_mod *realin, struct vario_mod variogram,struct welldata_mod well, struct grid_mod grid, double *D,struct realization_mod *realout);
+
+
+
+/*exponential covariance value for lag h*/
+double exponential(double h);
+
+
+/*Fast Fourier Transform - Cooley-Tukey algorithm     */
+/*datar: real part vector - to be transformed         */
+/*datai: imaginary part vector - to be transformed    */
+/*nn: number of gridblocks along the X,Y and Z axes   */
+/*ndim: number of dimensions                          */
+/*ifrwd: non-zero for forward transform, 0 for inverse*/
+/*icplx: non-zero for complex data, 0 for real        */
+/*workr: utility real part vector for storage         */
+/*worki: utility imaginary part vector for storage    */
+/*The transformed data are returned in datar and datai*/
+void fourt(double *datar,double *datai, int nn[3], int ndim, int ifrwd, int icplx,double *workr,double *worki);
+
+
+/*calculates F(x) = (1/a)*exp(-x*x/2)*/
+double funtrun1(double x);
+
+
+/*cumulative standard normal value*/
+float G(float x);
+
+
+/*gamma covariance value for lag h and exponent alpha*/
+double gammf(double h, double alpha);
+
+
+/*returns the value ln(G(x))*/
+float gammln(float xx);
+
+
+/*incomplete gamma fnction*/
+float gammp(float a, float x);
+
+
+/*returns a normally distributed deviate with 0 mean*/
+/*and unit variance, using ran1(idum) as the source */
+/*of uniform deviates                               */
+/*idum: seed                                        */
+double gasdev(long *idum, long *idum2, long *iy, long *iv, int *iset);
+
+/*gaussian covariance value for lag h*/
+double gaussian(double h);
+
+
+/*incomplete gamma function evaluated by its continued */
+/*fraction represented as gammcf, also returns ln(G(a))*/ 
+/*as gln                                               */
+void gcf(float *gammcf, float a, float x, float *gln);
+
+
+/*computation of the covariance matrix for the well data*/
+/*well coordinates have no specific unit                */
+/*The dimension of C is given by n                      */
+/*C defines the correlation between the first n wells   */
+/*C is recorded as a vector so that                     */
+/*C[k] = Cij with i = [0...nwell-1], j = [0...nwell-1]  */
+/*and k = j+i(i+1)/2                                    */
+/*variogram: structure defined above                    */
+/*well: structure defined above                         */
+void gen_cov_matrix(double *C, struct vario_mod variogram, struct welldata_mod well, int n);
+
+
+/*Ginv                                                  */
+/*Computes the inverse of the standard normal cumulative*/
+/*distribution function with a numerical approximation  */ 
+/*from Statistical Computing,by W.J. Kennedy, Jr. and   */
+/*James E. Gentle, 1980, p. 95.                         */
+/*input :                                               */
+/*p: cumulative probability value                       */
+float Ginv(float p);
+
+
+/*gradual combination of 1 realization + Nadded  */
+/*complementary realizations                     */
+/*rho: gradual deformation parameters            */
+/*rho[0...NZONES*Nadded-1]                       */
+/*rangement des vecteurs colonnes les uns apres  */
+/*les autres                                     */
+/*Zo: starting realization                       */
+/*Zo[0...n]                                      */
+/*Z: complementary realizations all stored       */
+/*Z[0...n-1 n...2n-1 ...(Nadded-1)n...Nadded.n-1]*/
+/*sequentially in a single vector                */
+/*Nadded: number of complementary realizations   */
+/*n: number of components per realization        */
+/*NZONES: number of subregions                   */
+/*grid: grid definition                          */
+void gradual(struct grad_mod grad,float *Zo,float *Z,float *Zfinal,int n,struct grid_mod grid);
+
+
+/*computes the size of the underlying grid for FFTs*/
+/*input:                                           */
+/*variogram: structure defining the variogram model*/
+/*grid: structure defining the actual grid         */
+/*output:                                          */
+/*n: vector with the number of cells along the     */
+/*   X, Y and Z axes for the underlying grid       */
+/*   i = [0 1 2]                                   */
+void cgrid(struct vario_mod variogram, struct grid_mod grid, int n[3]);
+
+/*incomplete gamma function evaluated by its series*/
+/*representation as gamser, also returns ln(G(a))  */ 
+/*as gln                                           */
+void gser(float *gamser, float a, float x, float *gln);
+
+
+/*calculates x so that x = invF(u)               */
+/*F is the cumulative density function for the   */
+/*function approximating the Gaussian function   */
+/*u: uniform deviate between 0 and 1             */
+/*lim_inf: lower bound of the considered interval*/
+/*lim_sup: upper bound of the considered interval*/
+/*C: normalizing constant                        */
+double invtrun1(double u, double lim_inf, double lim_sup, double C);
+
+
+/*computes the kriging mean and variance*/
+/*for the vector bi, i = [0...n-1]      */
+void krig_stat(float *b, int n, struct vario_mod variogram, struct welldata_mod well, float *mean, float *var);
+
+
+/* computes the number of gridblocks for one dimension*/
+/*N: initial number of gridblocks                     */
+/*i: considered direction                             */
+/*scf: correlation length                             */
+/*ap: normalized anisotropy axes                      */
+int length(int N, int i, double *scf, double *ap, double D, int Nvari);
+
+/*calculates L.Z/
+/* L     : lower triangular matrix recorded            */
+/*         (per raws) as a vector with only components */
+/*         Lij so that j <= i, i = [0...n-1]           */
+/* Z     : vector, Zi avec i = [0...n-1]               */
+/* b     : vector, bi avec i = [0...n-1]               */
+/* n     : dimension of matrix Lij                     */
+/*                                                     */
+/* The solution vector is returned in b                */
+void LtimeZ(double *L, float *Z, float *b, int n);
+
+
+/*calculates C.x/
+/* C     : symmetric positive-definite matrix recorded */
+/*         (per raws) as a vector with only components */
+/*         Cij so that j <= i, i = [0...n-1]           */
+/* x     : vector, xi avec i = [0...n-1]               */
+/* b     : vector, bi avec i = [0...n-1]               */
+/* n     : dimension of matrix Cij                     */
+/*                                                     */
+/* The result vector is returned in b                  */
+void mat_vec(double *C, double *x, double *b, int n);
+
+
+/*determines the greatest prime factor of an integer*/
+int maxfactor(int n);
+
+/*metrop returns a boolean varible that issues a       */
+/*verdict on whether to accept a reconfiguration       */
+/*defined by the probability ratio "ratio".            */
+/*If ratio >= 1, metrop = 1(true), while if ratio < 1, */
+/*metrop is only true with probability "ratio"         */
+int metrop(double ratio,long *idum,long *idum2, long *iy, long *iv);
+
+
+/*2-norm of vector b                 */
+/* b : vector                        */
+/* n : length of b, bi, i = [0...n-1]*/
+/*returns the norm of b              */
+double norm(double *b,int n);
+
+
+/*value of g(x) where g is the normal function*/
+double normal(double x);
+
+
+/*nugget covariance value for lag h*/
+double nugget(double h);
+
+
+/*power covariance value for lag h and exponent alpha*/
+double power(double h,double alpha);
+
+
+/*generates uniform deviates between 0 and 1*/
+/*idum: seed                                */
+double ran2(long *idum, long *idum2, long *iy, long *iv);
+
+
+
+/*calculates bt.b                */
+/* b : vector, bi, i = [0...n-1] */
+/* n : length of b               */
+/*returns the scalar product of b*/
+double scal_vec(double *b,int n);
+
+
+/*solves the set of n linear equations Cx = D           */
+/* C     : symmetric positive-definite matrix recorded  */
+/*         (per raws) as a vector with only components  */
+/*         Cij so that j <= i, i = [0...n-1]            */
+/* D     : right-hand side vector, Di avec i = [0...n-1]*/
+/* n     : dimension of matrix Cij                      */
+/*                                                      */
+/* The solution vector is returned in D                 */
+/* CONJUGATE GRADIENT method                            */
+void solve3(double *C, double *D, int n);
+
+
+/*sorts an array [0...n-1] into ascending order using */
+/*shell                                               */ 
+void sort(float n, float *arr);
+
+
+/*spherical covariance value for lag h*/
+double spherical(double h);
+
+
+/*stable covariance value for lag h and exponent alpha*/
+double stable(double h, double alpha);
+
+
+/*conversion of log mean and variance to nor*/
+void statlog2nor(struct statistic_mod *pstat);
+
+
+/*tries factor                               */
+/*pnum: number to be decomposed              */
+/*fact: suggested factor                     */
+/*pmaxfac: memory to keep the greatest factor*/
+int test_fact(int *pnum, int fact, int *pmaxfac);
+
+
+/*calculates the integrale of an approximate function*/
+/*for the Gaussian function over an interval defined */
+/*by lim_inf and lim_sup                             */
+/*lim_inf: lower bound of the considered interval    */
+/*lim_sup: upper bound of the considered interval    */
+double trun1(double lim_inf, double lim_sup);
+
+
+/*draws a truncated gaussian variable between lim_inf*/
+/*and lim_sup                                        */
+/*idum: seed                                         */
+double trungasdev(long *idum,double lim_inf,double lim_sup,long *idum2, long *iy, long iv[NTAB]);
+
+/* tb1.b2                                    */
+/* b1 : vector                               */
+/* b2 : vector                               */
+/* n : length of b1 and b2, bi, i = [0...n-1]*/
+/*returns the norm the product tb1.b2        */
+double vec_vec(double *b1, double *b2,int n);
+
+
+/*turns the volume fractions into Gaussian thresholds  */
+/*facies: structure defined above                      */
+/*thresholds: output threshold vector fot i = [0...n-1]*/
+/*where n is the number of facies-1                    */
+/*USES normal*/
+void vf2gthres(struct statfacies_mod facies,float *thresholds);
+
+void polint(float xa[],float ya[],int n,float x, float *y,float *dy);
+
+
+
+#endif

fftma_module/gen/Interface/pressure.h

@@ -0,0 +1,21 @@
+#include <stdlib.h>
+#include <string.h>
+#include "genlib.h"
+#include "geostat.h"
+
+#ifndef _PRESSURE_H
+#define _PRESSURE_H
+
+/*STRUCTURES*/
+/*----------*/
+
+/* pressure_mod                                        */
+/* x:  macroscopic gradient value in x direction       */
+/* y:  macroscopic gradient value in x direction       */
+/* z:  macroscopic gradient value in x direction       */
+struct pressure_mod {
+  double x,y,z;
+};
+
+
+#endif // define _PRESSURE_H

fftma_module/gen/Interface/simpio.h

@@ -0,0 +1,75 @@
+/*
+ * File: simpio.h
+ * Version: 1.0
+ * Last modified on Wed Apr 27 07:29:13 1994 by eroberts
+ * -----------------------------------------------------
+ * This interface provides access to a simple package of
+ * functions that simplify the reading of input data.
+ */
+
+#ifndef _simpio_h
+#define _simpio_h
+
+#include "genlib.h"
+
+/*
+ * Function: GetInteger
+ * Usage: i = GetInteger();
+ * ------------------------
+ * GetInteger reads a line of text from standard input and scans
+ * it as an integer.  The integer value is returned.  If an
+ * integer cannot be scanned or if more characters follow the
+ * number, the user is given a chance to retry.
+ */
+
+int GetInteger(void);
+
+/*
+ * Function: GetLong
+ * Usage: l = GetLong();
+ * ---------------------
+ * GetLong reads a line of text from standard input and scans
+ * it as a long integer.  The value is returned as a long.
+ * If an integer cannot be scanned or if more characters follow
+ * the number, the user is given a chance to retry.
+ */
+
+long GetLong(void);
+
+/*
+ * Function: GetReal
+ * Usage: x = GetReal();
+ * ---------------------
+ * GetReal reads a line of text from standard input and scans
+ * it as a double.  If the number cannot be scanned or if extra
+ * characters follow after the number ends, the user is given
+ * a chance to reenter the value.
+ */
+
+double GetReal(void);
+
+/*
+ * Function: GetLine
+ * Usage: s = GetLine();
+ * ---------------------
+ * GetLine reads a line of text from standard input and returns
+ * the line as a string.  The newline character that terminates
+ * the input is not stored as part of the string.
+ */
+
+string GetLine(void);
+
+/*
+ * Function: ReadLine
+ * Usage: s = ReadLine(infile);
+ * ----------------------------
+ * ReadLine reads a line of text from the input file and
+ * returns the line as a string.  The newline character
+ * that terminates the input is not stored as part of the
+ * string.  The ReadLine function returns NULL if infile
+ * is at the end-of-file position.
+ */
+
+string ReadLine(FILE *infile);
+
+#endif

fftma_module/gen/Interface/toolsFFTMA.h

@@ -0,0 +1,80 @@
+#include <stdlib.h>
+#include <string.h>
+#include "genlib.h"
+#include "geostat.h"
+
+#ifndef _TOOLSFFTMA_H
+#define _TOOLSFFTMA_H
+
+/* Create december, the 16th 2002 */
+/* Modified december, the 9th 2002 */
+
+/* List of functions: */
+/* ------------------ */
+/* kgeneration, FFTMA2, prebuild_gwn, build_real, addstat2, clean_real */
+
+
+/*FUNCTIONS*/
+/*----------*/
+
+void  kgeneration(long seed,struct grid_mod grid,struct statistic_mod stat,struct vario_mod variogram,string filename[8],struct realization_mod *Z,struct realization_mod *Y,struct realization_mod *Y2, int n[3], int *genere, int *gwnwrite, struct realization_mod *gwnoise);
+
+/*FAST FOURIER TRANSFORM Pressure Simulation   */
+/*Turns a Gaussian white noise vector into a   */
+/*spatially correlated vector                  */
+/*input:                                       */
+/*variogram: structure defining the variogram  */
+/*           model                             */
+/*grid: structure defining the grid            */
+/*n: vector with the number of cells along the */
+/*   X, Y and Z axes for the underlying grid   */
+/*   i = [0 1 2]                               */
+/*   --> 0 0 0        : n will be computed and */
+/*   updated as output                         */
+/*   --> nx ny nz: these dimensions are used   */
+/*realin: structure defining a realization -   */
+/*        must be a Gaussian white noise       */
+/*gradient: macroscopic gradient pression vector */
+/*output:                                      */
+/*realout: structure defining a realization -  */
+/*realout2: structure defining a pressure field */
+/*realout3: structure defining a xvelocity field */
+/*realout4: structure defining a yvelocity field */
+/*realout5: structure defining a zvelocity field */
+
+void FFTMA2(struct vario_mod variogram,struct grid_mod grid,int n[3],struct realization_mod *realin,struct realization_mod *realout);
+
+/* prebuild_gwn      */
+/* Produce a first construction in real space of the Gaussian white noise */
+/* grid:  structure defining the grid          */
+/*n: vector with the number of cells along the */
+/*   X, Y and Z axes for the underlying grid   */
+/*   i = [0 1 2]                               */
+/*   --> 0 0 0        : n will be computed and */
+/*   updated as output                         */
+/*   --> nx ny nz: these dimensions are used   */
+/*realin: structure defining a realization -   */
+/*        must be a Gaussian white noise       */
+/*realization: structure defining a realization*/
+
+void prebuild_gwn(struct grid_mod grid,int n[3],struct realization_mod *realin,double *realization,int solver);
+
+/* build_real   */
+/* build a realization in the spectral domain */
+/*n: vector with the number of cells along the */
+/*   X, Y and Z axes for the underlying grid   */
+/*   i = [0 1 2]                               */
+/*   --> 0 0 0        : n will be computed and */
+/*   updated as output                         */
+/*   --> nx ny nz: these dimensions are used   */
+/*covar: vector defining the covariance in spectral domain   */
+/*realization: vector defining the real part   */
+/*ireal: vector defining the i-part   */
+
+void build_real(int n[3],int NTOT,double *covar,double *realization,double *ireal);
+
+void addstat2(struct realization_mod *realin,struct statistic_mod stat ,struct realization_mod *realout,struct realization_mod *realout2);
+
+void clean_real(struct realization_mod *realin,int n[3],struct grid_mod grid,double *vectorresult,struct realization_mod *realout);
+
+#endif // define _TOOLSFFTMA_H

fftma_module/gen/Interface/toolsIO.h

@@ -0,0 +1,91 @@
+#include <stdlib.h>
+#include <string.h>
+#include "genlib.h"
+#include "geostat.h"
+#include "pressure.h"
+
+#ifndef _TOOLSIO_H
+#define _TOOLSIO_H
+
+/* Create december, the 16th 2002 */
+/* Modified december, the 9th 2002 */
+
+/* List of functions: */
+/* ------------------ */
+/* writefile,writefile_bin,readfile_bin,inputdata,inputfiledata,readdata,debuginput   */
+/* testmemory, testopenfile */
+
+
+/*FUNCTIONS*/
+/*----------*/
+
+/* Lecture dans un fichier */
+
+/* Inputdata   */
+/*              */
+/* input data needed for realizations*/
+/* seed: seed                                                                    */
+/* grid: structure defining the actual grid                                      */
+/* filename: name of files                                                       */
+/* variogram: struture defining the variogram model                              */
+/* stat: struture defining the mean and the variance of permeability realization */
+/* pression: structure defining the gradient pressure                            */
+
+void inputdata(long *seed,struct grid_mod *grid,string filename[7],struct vario_mod *variogram,struct statistic_mod *stat,struct pressure_mod  *pression);
+
+void inputfiledata(string inputfile,long *seed,struct grid_mod *grid,string filename[7],struct vario_mod *variogram,struct statistic_mod *stat,struct pressure_mod *pression);
+
+/* void readdata(long *seed,struct grid_mod *grid,string filename[8],struct vario_mod *variogram,struct statistic_mod *stat,struct pressure_mod *pression,int *Ksolver,struct  realization_mod *Kfield, char *argv[]); */
+
+void readdata(long *seed,struct grid_mod *grid,string filename[8],struct vario_mod *variogram,struct statistic_mod *stat,struct pressure_mod *pression,int *Ksolver,int *genere, int *gwnwrite, struct realization_mod *Kfield,struct  realization_mod *gwnoise, char *argv[]);
+
+void readdata2(long *seed,struct grid_mod *grid,string filename[8],struct vario_mod *variogram,struct statistic_mod *stat,struct pressure_mod *pression,int *Ksolver,int *genere, int *gwnwrite, int *format_file, struct realization_mod *Kfield,struct  realization_mod *gwnoise, char *argv[]);
+
+/* readfile_bin  */
+/*           */
+/* read in the file "filename" the vector values of a */
+/* realization_mod variable   */
+/* filename: explicit         */
+/* realin: structure defining a realization */
+
+void readfile_bin(string filename, struct realization_mod *realin);
+
+
+/* Writefile  */
+/*           */
+/* write in the file "filename" the vector values of a */
+/* realization_mod variable   */
+/* filename: explicit         */
+/* realin: structure defining a realization */
+
+void writefile( string filename, struct realization_mod *realin);
+
+/* Writefile_bin  */
+/*           */
+/* write in the file "filename" the vector values of a */
+/* realization_mod variable   */
+/* filename: explicit         */
+/* realin: structure defining a realization */
+
+void writefile_bin( string filename, struct realization_mod *realin);
+
+
+
+/* DebugInput  */
+/*             */
+/* Display the input data */
+/* seed: seed                                                                    */
+/* grid: structure defining the actual grid                                      */
+/* filename: name of files                                                       */
+/* variogram: struture defining the variogram model                              */
+/* stat: struture defining the mean and the variance of permeability realization */
+/* pression: structure defining the gradient pressure                            */
+void debuginput(long *seed,struct grid_mod *grid,string filename[7],struct vario_mod *variogram,struct statistic_mod *stat,struct pressure_mod *pression,int *Ksolver,int *genere, int *gwnwrite);
+
+/* Allocation test */
+void testmemory(double *realint);
+
+/* Test open file */
+void testopenfile(FILE *fp);
+
+#endif // define _TOOLSIO_H

fftma_module/gen/LIBCS106X/Makefile.libCS106X

@@ -0,0 +1,13 @@
+CC = cc
+CCFLAG =
+
+LIB = libCS106X_${ARCH}.a		
+%.o:  %.c
+	$(CC) $(CCFLAG) -c $< 
+
+
+$(LIB) : genlib.o  random.o  simpio.o  strlib.o symtab.o scanadt.o stack.o
+	ar r $@ $?
+
+clean : 
+	rm *.o

fftma_module/gen/LIBCS106X/Makefile_debug

@@ -0,0 +1,21 @@
+# CC = gcc
+# CCFLAG =
+
+ifeq (${ARCH},sun)
+        CC = cc
+	CCFLAG = -g
+endif
+ifeq (${ARCH},linux)
+        CC = gcc
+	CCFLAG = -g
+endif
+LIB = libCS106X_debug_${ARCH}.a		
+%.o:  %.c
+	$(CC) $(CCFLAG) -c $< 
+
+
+$(LIB) : genlib.o  random.o  simpio.o  strlib.o symtab.o scanadt.o stack.o
+	ar r $@ $?
+
+clean : 
+	rm *.o

fftma_module/gen/LIBCS106X/genlib.c

@@ -0,0 +1,63 @@
+/*
+ * File: genlib.c
+ * Version: 1.0
+ * Last modified on Fri Jul 15 15:45:52 1994 by eroberts
+ * -----------------------------------------------------
+ * This file implements the general C library package.  See the
+ * interface description in genlib.h for details.
+ */
+
+#include <stdio.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdarg.h>
+
+#include "genlib.h"
+
+/*
+ * Constants:
+ * ----------
+ * ErrorExitStatus -- Status value used in exit call
+ */
+
+#define ErrorExitStatus 1
+
+/* Section 1 -- Define new "primitive" types */
+
+/*
+ * Constant: UNDEFINED
+ * -------------------
+ * This entry defines the target of the UNDEFINED constant.
+ */
+
+char undefined_object[] = "UNDEFINED";
+
+/* Section 2 -- Memory allocation */
+
+void *GetBlock(size_t nbytes)
+{
+    void *result;
+
+    result = malloc(nbytes);
+    if (result == NULL) Error("No memory available");
+    return (result);
+}
+
+void FreeBlock(void *ptr)
+{
+    free(ptr);
+}
+
+/* Section 3 -- Basic error handling */
+
+void Error(string msg, ...)
+{
+    va_list args;
+
+    va_start(args, msg);
+    fprintf(stderr, "Error: ");
+    vfprintf(stderr, msg, args);
+    fprintf(stderr, "\n");
+    va_end(args);
+    exit(ErrorExitStatus);
+}

fftma_module/gen/LIBCS106X/genlib.h

@@ -0,0 +1,163 @@
+/*
+ * File: genlib.h
+ * Version: 1.0
+ * Last modified on Fri Jul 15 15:45:52 1994 by eroberts
+ * -----------------------------------------------------
+ * This file contains several definitions that form the
+ * core of a general-purpose ANSI C library developed by Eric
+ * Roberts.  The goal of this library is to provide a basic
+ * set of tools and conventions that increase the readability
+ * of C programs, particularly as they are used in a teaching
+ * environment.
+ *
+ * The basic definitions provided by genlib.h are:
+ *
+ *    1.  Declarations for several new "primitive" types
+ *        (most importantly bool and string) that are
+ *        used throughout the other libraries and
+ *        applications as fundamental types.
+ *
+ *    2.  A new set of functions for memory allocation.
+ *
+ *    3.  A function for error handling.
+ */
+
+#ifndef _genlib_h
+#define _genlib_h
+
+#include <stdio.h>
+#include <stdlib.h>
+#include <stddef.h>
+
+/* Section 1 -- Define new "primitive" types */
+
+/*
+ * Type: bool
+ * ----------
+ * This type has two values, FALSE and TRUE, which are equal to 0
+ * and 1, respectively.  Most of the advantage of defining this type
+ * comes from readability because it allows the programmer to
+ * provide documentation that a variable will take on only one of
+ * these two values.  Designing a portable representation, however,
+ * is surprisingly hard, because many libraries and some compilers
+ * define these names.  The definitions are usually compatible but
+ * may still be flagged as errors.
+ */
+
+#ifdef THINK_C
+   typedef int bool;
+#else
+#  ifdef TRUE
+#    ifndef bool
+#      define bool int
+#    endif
+#  else
+#    ifdef bool
+#      define FALSE 0
+#      define TRUE 1
+#    else
+       typedef enum {FALSE, TRUE} bool;
+#    endif
+#  endif
+#endif
+
+/*
+ * Type: string
+ * ------------
+ * The type string is identical to the type char *, which is
+ * traditionally used in C programs.  The main point of defining a
+ * new type is to improve program readability.   At the abstraction
+ * levels at which the type string is used, it is usually not
+ * important to take the string apart into its component characters.
+ * Declaring it as a string emphasizes this atomicity.
+ */
+
+typedef char *string;
+
+/*
+ * Constant: UNDEFINED
+ * -------------------
+ * Besides NULL, the only other constant of pointer type is
+ * UNDEFINED, which is used in certain packages as a special
+ * sentinel to indicate an undefined pointer value.  In many
+ * such contexts, NULL is a legitimate data value and is
+ * therefore inappropriate as a sentinel.
+ */
+
+#define UNDEFINED ((void *) undefined_object)
+
+extern char undefined_object[];
+
+/* Section 2 -- Memory allocation */
+
+/*
+ * General notes:
+ * --------------
+ * These functions provide a common interface for memory
+ * allocation.  All functions in the library that allocate
+ * memory do so using GetBlock and FreeBlock.  Even though
+ * the ANSI standard defines malloc and free for the same
+ * purpose, using GetBlock and FreeBlock provides greater
+ * compatibility with non-ANSI implementations, automatic
+ * out-of-memory error detection, and the possibility of
+ * substituting a garbage-collecting allocator.
+ */
+
+/*
+ * Function: GetBlock
+ * Usage: ptr = (type) GetBlock(nbytes);
+ * -------------------------------------
+ * GetBlock allocates a block of memory of the given size.  If
+ * no memory is available, GetBlock generates an error.
+ */
+
+void *GetBlock(size_t nbytes);
+
+/*
+ * Function: FreeBlock
+ * Usage: FreeBlock(ptr);
+ * ----------------------
+ * FreeBlock frees the memory associated with ptr, which must
+ * have been allocated using GetBlock, New, or NewArray.
+ */
+
+void FreeBlock(void *ptr);
+
+/*
+ * Macro: New
+ * Usage: p = New(pointer-type);
+ * -----------------------------
+ * The New pseudofunction allocates enough space to hold an
+ * object of the type to which pointer-type points and returns
+ * a pointer to the newly allocated pointer.  Note that
+ * "New" is different from the "new" operator used in C++;
+ * the former takes a pointer type and the latter takes the
+ * target type.
+ */
+
+#define New(type) ((type) GetBlock(sizeof *((type) NULL)))
+
+/*
+ * Macro: NewArray
+ * Usage: p = NewArray(n, element-type);
+ * -------------------------------------
+ * NewArray allocates enough space to hold an array of n
+ * values of the specified element type.
+ */
+
+#define NewArray(n, type) ((type *) GetBlock((n) * sizeof(type)))
+
+/* Section 3 -- Basic error handling */
+
+/*
+ * Function: Error
+ * Usage: Error(msg, ...)
+ * ----------------------
+ * Error generates an error string, expanding % constructions
+ * appearing in the error message string just as printf does.
+ * After printing the error message, the program terminates.
+ */
+
+void Error(string msg, ...);
+
+#endif

fftma_module/gen/LIBCS106X/random.c

@@ -0,0 +1,77 @@
+/*
+ * File: random.c
+ * Version: 1.0
+ * Last modified on Mon Sep 13 10:42:45 1993 by eroberts
+ * -----------------------------------------------------
+ * This file implements the random.h interface.
+ */
+
+#include <stdio.h>
+#include <stdlib.h>
+#include <time.h>
+
+#include "genlib.h"
+#include "random.h"
+
+/*
+ * Function: Randomize
+ * -------------------
+ * This function operates by setting the random number
+ * seed to the current time.  The srand function is
+ * provided by the <stdlib.h> library and requires an
+ * integer argument.  The time function is provided
+ * by <time.h>.
+ */
+
+void Randomize(void)
+{
+    srand((int) time(NULL));
+}
+
+/*
+ * Function: RandomInteger
+ * -----------------------
+ * This function first obtains a random integer in
+ * the range [0..RAND_MAX] by applying four steps:
+ * (1) Generate a real number between 0 and 1.
+ * (2) Scale it to the appropriate range size.
+ * (3) Truncate the value to an integer.
+ * (4) Translate it to the appropriate starting point.
+ */
+
+int RandomInteger(int low, int high)
+{
+    int k;
+    double d;
+
+    d = (double) rand() / ((double) RAND_MAX + 1);
+    k = (int) (d * (high - low + 1));
+    return (low + k);
+}
+
+/*
+ * Function: RandomReal
+ * --------------------
+ * The implementation of RandomReal is similar to that
+ * of RandomInteger, without the truncation step.
+ */
+
+double RandomReal(double low, double high)
+{
+    double d;
+
+    d = (double) rand() / ((double) RAND_MAX + 1);
+    return (low + d * (high - low));
+}
+
+/*
+ * Function: RandomChance
+ * ----------------------
+ * This function uses RandomReal to generate a number
+ * between 0 and 100, which it then compares to p.
+ */
+
+bool RandomChance(double p)
+{
+    return (RandomReal(0, 1) < p);
+}

fftma_module/gen/LIBCS106X/random.h

@@ -0,0 +1,73 @@
+/*
+ * File: random.h
+ * Version: 1.0
+ * Last modified on Fri Jul 22 16:44:36 1994 by eroberts
+ * -----------------------------------------------------
+ * This interface provides several functions for generating
+ * pseudo-random numbers.
+ */
+
+#ifndef _random_h
+#define _random_h
+
+#include "genlib.h"
+#include <stdlib.h>
+
+/*
+ * Constant: RAND_MAX
+ * ------------------
+ * Unfortunately, several libraries that supposedly conform to
+ * the ANSI standard do not define RAND_MAX in <stdlib.h>.  To
+ * reduce portability problems, this interface defines RAND_MAX
+ * to be the largest positive integer if it is undefined.
+ */
+
+#ifndef RAND_MAX
+#  define RAND_MAX ((int) ((unsigned) ~0 >> 1))
+#endif
+
+/*
+ * Function: Randomize
+ * Usage: Randomize();
+ * -------------------
+ * This function sets the random seed so that the random sequence
+ * is unpredictable.  During the debugging phase, it is best not
+ * to call this function, so that program behavior is repeatable.
+ */
+
+void Randomize(void);
+
+/*
+ * Function: RandomInteger
+ * Usage: n = RandomInteger(low, high);
+ * ------------------------------------
+ * This function returns a random integer in the range low to high,
+ * inclusive.
+ */
+
+int RandomInteger(int low, int high);
+
+/*
+ * Function: RandomReal
+ * Usage: d = RandomReal(low, high);
+ * ---------------------------------
+ * This function returns a random real number in the half-open
+ * interval [low .. high), meaning that the result is always
+ * greater than or equal to low but strictly less than high.
+ */
+
+double RandomReal(double low, double high);
+
+/*
+ * Function: RandomChance
+ * Usage: if (RandomChance(p)) . . .
+ * ---------------------------------
+ * The RandomChance function returns TRUE with the probability
+ * indicated by p, which should be a floating-point number between
+ * 0 (meaning never) and 1 (meaning always).  For example, calling
+ * RandomChance(.30) returns TRUE 30 percent of the time.
+ */
+
+bool RandomChance(double p);
+
+#endif

fftma_module/gen/LIBCS106X/scanadt.c

@@ -0,0 +1,162 @@
+/*
+ * File: scanadt.c
+ * ---------------
+ * This file implements the scanadt.h interface.
+ */
+
+#include <stdio.h>
+#include <ctype.h>
+#include "genlib.h"
+#include "strlib.h"
+#include "scanadt.h"
+
+/*
+ * Type: scannerCDT
+ * ----------------
+ * This structure is the concrete representation of the type
+ * scannerADT, which is exported by this interface.  Its purpose
+ * is to maintain the state of the scanner between calls.  The
+ * details of the representation are invisible to the client,
+ * but consist of the following fields:
+ *
+ * str          -- Copy of string passed to SetScannerString
+ * len          -- Length of string, saved for efficiency
+ * cp           -- Current character position in the string
+ * savedToken   -- String saved by SaveToken (NULL indicates none)
+ * spaceOption  -- Setting of the space option extension
+ */
+
+struct scannerCDT {
+    string str;
+    int len;
+    int cp;
+    string savedToken;
+    spaceOptionT spaceOption;
+};
+
+/* Private function prototypes */
+
+static void SkipSpaces(scannerADT scanner);
+static int ScanToEndOfIdentifier(scannerADT scanner);
+
+/* Exported entries */
+
+scannerADT NewScanner(void)
+{
+    scannerADT scanner;
+
+    scanner = New(scannerADT);
+    scanner->str = NULL;
+    scanner->spaceOption = PreserveSpaces;
+    return (scanner);
+}
+
+void FreeScanner(scannerADT scanner)
+{
+    if (scanner->str != NULL) FreeBlock(scanner->str);
+    FreeBlock(scanner);
+}
+
+void SetScannerString(scannerADT scanner, string str)
+{
+    if (scanner->str != NULL) FreeBlock(scanner->str);
+    scanner->str = CopyString(str);
+    scanner->len = StringLength(str);
+    scanner->cp = 0;
+    scanner->savedToken = NULL;
+}
+
+string ReadToken(scannerADT scanner)
+{
+    char ch;
+    string token;
+    int start, finish;
+
+    if (scanner->str == NULL) {
+        Error("SetScannerString has not been called");
+    }
+    if (scanner->savedToken != NULL) {
+        token = scanner->savedToken;
+        scanner->savedToken = NULL;
+        return (token);
+    }
+    if (scanner->spaceOption == IgnoreSpaces) SkipSpaces(scanner);
+    start = finish = scanner->cp;
+    if (start >= scanner->len) return (CopyString(""));
+    ch = scanner->str[scanner->cp];
+    if (isalnum(ch)) {
+        finish = ScanToEndOfIdentifier(scanner);
+    } else {
+        scanner->cp++;
+    }
+    return (SubString(scanner->str, start, finish));
+}
+
+bool MoreTokensExist(scannerADT scanner)
+{
+    if (scanner->str == NULL) {
+        Error("SetScannerString has not been called");
+    }
+    if (scanner->savedToken != NULL) {
+        return (!StringEqual(scanner->savedToken, ""));
+    }
+    if (scanner->spaceOption == IgnoreSpaces) SkipSpaces(scanner);
+    return (scanner->cp < scanner->len);
+}
+
+void SaveToken(scannerADT scanner, string token)
+{
+    if (scanner->str == NULL) {
+        Error("SetScannerString has not been called");
+    }
+    if (scanner->savedToken != NULL) {
+        Error("Token has already been saved");
+    }
+    scanner->savedToken = token;
+}
+
+void SetScannerSpaceOption(scannerADT scanner, spaceOptionT option)
+{
+    scanner->spaceOption = option;
+}
+
+spaceOptionT GetScannerSpaceOption(scannerADT scanner)
+{
+    return (scanner->spaceOption);
+}
+
+/* Private functions */
+
+/*
+ * Function: SkipSpaces
+ * Usage: SkipSpaces(scanner);
+ * ---------------------------
+ * This function advances the position of the scanner until the
+ * current character is not a whitespace character.
+ */
+
+static void SkipSpaces(scannerADT scanner)
+{
+    while (isspace(scanner->str[scanner->cp])) {
+        scanner->cp++;
+    }
+}
+
+/*
+ * Function: ScanToEndOfIdentifier
+ * Usage: finish = ScanToEndOfIdentifier(scanner);
+ * -----------------------------------------------
+ * This function advances the position of the scanner until it
+ * reaches the end of a sequence of letters or digits that make
+ * up an identifier.  The return value is the index of the last
+ * character in the identifier; the value of the stored index
+ * cp is the first character after that.
+ */
+
+static int ScanToEndOfIdentifier(scannerADT scanner)
+{
+    while (isalnum(scanner->str[scanner->cp])) {
+        scanner->cp++;
+    }
+    return (scanner->cp - 1);
+}

fftma_module/gen/LIBCS106X/scanadt.h

@@ -0,0 +1,159 @@
+/*
+ * File: scanadt.h
+ * ---------------
+ * This file is the interface to a module that exports an abstract
+ * data type to facilitate dividing a string into logical units
+ * called "tokens," which are either
+ *
+ * 1. Strings of consecutive letters and digits representing words
+ * 2. One-character strings representing punctuation or separators
+ *
+ * To use this package, you must first create an instance of a
+ * scannerADT by calling
+ *
+ *      scanner = NewScanner();
+ *
+ * All other calls to the scanner package take this variable as their
+ * first argument to identify a particular instance of the abstract
+ * scanner type.
+ *
+ * You initialize the scanner to hold a particular string by calling
+ *
+ *      SetScannerString(scanner, str);
+ *
+ * where str is the string from which tokens should be read.  To
+ * retrieve each individual token, you make the following call:
+ *
+ *      token = ReadToken(scanner);
+ *
+ * To determine whether any tokens remain to be read, you can call
+ * the predicate function MoreTokensExist(scanner).  The ReadToken
+ * function returns the empty string after the last token is read.
+ *
+ * The following code fragment serves as an idiom for processing
+ * each token in the string inputString:
+ *
+ *      scanner = NewScanner();
+ *      SetScannerString(scanner, inputString);
+ *      while (MoreTokensExist(scanner)) {
+ *          token = ReadToken(scanner);
+ *          . . . process the token . . .
+ *      }
+ *
+ * This version of scanadt.h also supports the following extensions,
+ * which are documented later in the interface:
+ *
+ *   SaveToken
+ *   SetScannerSpaceOption
+ */
+
+#ifndef _scanadt_h
+#define _scanadt_h
+
+#include "genlib.h"
+
+/*
+ * Type: scannerADT
+ * ----------------
+ * This type is the abstract type used to represent a single instance
+ * of a scanner.  As with any abstract type, the details of the
+ * internal representation are hidden from the client.
+ */
+
+typedef struct scannerCDT *scannerADT;
+
+/*
+ * Function: NewScanner
+ * Usage: scanner = NewScanner();
+ * ------------------------------
+ * This function creates a new scanner instance.  All other functions
+ * in this interface take this scanner value as their first argument
+ * so that they can identify what particular instance of the scanner
+ * is in use.  This design makes it possible for clients to have more
+ * than one scanner process active at the same time.
+ */
+
+scannerADT NewScanner(void);
+
+/*
+ * Function: FreeScanner
+ * Usage: FreeScanner(scanner);
+ * ----------------------------
+ * This function frees the storage associated with scanner.
+ */
+
+void FreeScanner(scannerADT scanner);
+
+/*
+ * Function: SetScannerString
+ * Usage: SetScannerString(scanner, str);
+ * --------------------------------------
+ * This function initializes the scanner so that it will start
+ * extracting tokens from the string str.
+ */
+
+void SetScannerString(scannerADT scanner, string str);
+
+/*
+ * Function: ReadToken
+ * Usage: token = ReadToken(scanner);
+ * ----------------------------------
+ * This function returns the next token from scanner.  If
+ * ReadToken is called when no tokens are available, it returns
+ * the empty string.  The token returned by ReadToken is always
+ * allocated in the heap, which means that clients can call
+ * FreeBlock when the token is no longer needed.
+ */
+
+string ReadToken(scannerADT scanner);
+
+/*
+ * Function: MoreTokensExist
+ * Usage: if (MoreTokensExist(scanner)) . . .
+ * ------------------------------------------
+ * This function returns TRUE as long as there are additional
+ * tokens for the scanner to read.
+ */
+
+bool MoreTokensExist(scannerADT scanner);
+
+/*
+ * Function: SaveToken
+ * Usage: SaveToken(scanner, token);
+ * ---------------------------------
+ * This function stores the token in the scanner data structure
+ * in such a way that the next time ReadToken is called, it will
+ * return that token without reading any additional characters
+ * from the input.
+ */
+
+void SaveToken(scannerADT scanner, string token);
+
+/*
+ * Functions: SetScannerSpaceOption, GetScannerSpaceOption
+ * Usage: SetScannerSpaceOption(scanner, option);
+ *        option = GetScannerSpaceOption(scanner);
+ * -----------------------------------------------
+ * The SetScannerSpaceOption function controls whether the scanner
+ * ignores whitespace characters or treats them as valid tokens.
+ * By default, the ReadToken function treats whitespace characters,
+ * such as spaces and tabs, just like any other punctuation mark.
+ * If, however, you call
+ *
+ *    SetScannerSpaceOption(scanner, IgnoreSpaces);
+ *
+ * the scanner will skip over any white space before reading a token.
+ * You can restore the original behavior by calling
+ *
+ *    SetScannerSpaceOption(scanner, PreserveSpaces);
+ *
+ * The GetScannerSpaceOption function returns the current setting
+ * of this option.
+ */
+
+typedef enum { PreserveSpaces, IgnoreSpaces } spaceOptionT;
+
+void SetScannerSpaceOption(scannerADT scanner, spaceOptionT option);
+spaceOptionT GetScannerSpaceOption(scannerADT scanner);
+
+#endif

fftma_module/gen/LIBCS106X/simpio.c

@@ -0,0 +1,157 @@
+/*
+ * File: simpio.c
+ * Version: 1.0
+ * Last modified on Fri Jul 15 14:10:41 1994 by eroberts
+ * -----------------------------------------------------
+ * This file implements the simpio.h interface.
+ */
+
+#include <stdio.h>
+#include <string.h>
+
+#include "genlib.h"
+#include "strlib.h"
+#include "simpio.h"
+
+/*
+ * Constants:
+ * ----------
+ * InitialBufferSize -- Initial buffer size for ReadLine
+ */
+
+#define InitialBufferSize 120
+
+/* Exported entries */
+
+/*
+ * Functions: GetInteger, GetLong, GetReal
+ * ---------------------------------------
+ * These functions first read a line and then call sscanf to
+ * translate the number.  Reading an entire line is essential to
+ * good error recovery, because the characters after the point of
+ * error would otherwise remain in the input buffer and confuse
+ * subsequent input operations.  The sscanf line allows white space
+ * before and after the number but no other extraneous characters.
+ */
+
+int GetInteger(void)
+{
+    string line;
+    int value;
+    char termch;
+
+    while (TRUE) {
+        line = GetLine();
+        switch (sscanf(line, " %d %c", &value, &termch)) {
+          case 1:
+            FreeBlock(line);
+            return (value);
+          case 2:
+            printf("Unexpected character: '%c'\n", termch);
+            break;
+          default:
+            printf("Please enter an integer\n");
+            break;
+        }
+        FreeBlock(line);
+        printf("Retry: ");
+    }
+}
+
+long GetLong(void)
+{
+    string line;
+    long value;
+    char termch;
+
+    while (TRUE) {
+        line = GetLine();
+        switch (sscanf(line, " %ld %c", &value, &termch)) {
+          case 1:
+            FreeBlock(line);
+            return (value);
+          case 2:
+            printf("Unexpected character: '%c'\n", termch);
+            break;
+          default:
+            printf("Please enter an integer\n");
+            break;
+        }
+        FreeBlock(line);
+        printf("Retry: ");
+    }
+}
+
+double GetReal(void)
+{
+    string line;
+    double value;
+    char termch;
+
+    while (TRUE) {
+        line = GetLine();
+        switch (sscanf(line, " %lf %c", &value, &termch)) {
+          case 1:
+            FreeBlock(line);
+            return (value);
+          case 2:
+            printf("Unexpected character: '%c'\n", termch);
+            break;
+          default:
+            printf("Please enter a real number\n");
+            break;
+        }
+        FreeBlock(line);
+        printf("Retry: ");
+    }
+}
+
+/*
+ * Function: GetLine
+ * -----------------
+ * This function is a simple wrapper; all the work is done by
+ * ReadLine.
+ */
+
+string GetLine(void)
+{
+    return (ReadLine(stdin));
+}
+
+/*
+ * Function: ReadLine
+ * ------------------
+ * This function operates by reading characters from the file
+ * into a dynamically allocated buffer.  If the buffer becomes
+ * full before the end of the line is reached, a new buffer
+ * twice the size of the previous one is allocated.
+ */
+
+string ReadLine(FILE *infile)
+{
+    string line, nline;
+    int n, ch, size;
+
+    n = 0;
+    size = InitialBufferSize;
+    line = GetBlock(size + 1);
+    while ((ch = getc(infile)) != '\n' && ch != EOF) {
+        if (n == size) {
+            size *= 2;
+            nline = (string) GetBlock(size + 1);
+            strncpy(nline, line, n);
+            FreeBlock(line);
+            line = nline;
+        }
+        line[n++] = ch;
+    }
+    if (n == 0 && ch == EOF) {
+        FreeBlock(line);
+        return (NULL);
+    }
+    line[n] = '\0';
+    nline = (string) GetBlock(n + 1);
+    strcpy(nline, line);
+    FreeBlock(line);
+    return (nline);
+}

fftma_module/gen/LIBCS106X/simpio.h

@@ -0,0 +1,75 @@
+/*
+ * File: simpio.h
+ * Version: 1.0
+ * Last modified on Wed Apr 27 07:29:13 1994 by eroberts
+ * -----------------------------------------------------
+ * This interface provides access to a simple package of
+ * functions that simplify the reading of input data.
+ */
+
+#ifndef _simpio_h
+#define _simpio_h
+
+#include "genlib.h"
+
+/*
+ * Function: GetInteger
+ * Usage: i = GetInteger();
+ * ------------------------
+ * GetInteger reads a line of text from standard input and scans
+ * it as an integer.  The integer value is returned.  If an
+ * integer cannot be scanned or if more characters follow the
+ * number, the user is given a chance to retry.
+ */
+
+int GetInteger(void);
+
+/*
+ * Function: GetLong
+ * Usage: l = GetLong();
+ * ---------------------
+ * GetLong reads a line of text from standard input and scans
+ * it as a long integer.  The value is returned as a long.
+ * If an integer cannot be scanned or if more characters follow
+ * the number, the user is given a chance to retry.
+ */
+
+long GetLong(void);
+
+/*
+ * Function: GetReal
+ * Usage: x = GetReal();
+ * ---------------------
+ * GetReal reads a line of text from standard input and scans
+ * it as a double.  If the number cannot be scanned or if extra
+ * characters follow after the number ends, the user is given
+ * a chance to reenter the value.
+ */
+
+double GetReal(void);
+
+/*
+ * Function: GetLine
+ * Usage: s = GetLine();
+ * ---------------------
+ * GetLine reads a line of text from standard input and returns
+ * the line as a string.  The newline character that terminates
+ * the input is not stored as part of the string.
+ */
+
+string GetLine(void);
+
+/*
+ * Function: ReadLine
+ * Usage: s = ReadLine(infile);
+ * ----------------------------
+ * ReadLine reads a line of text from the input file and
+ * returns the line as a string.  The newline character
+ * that terminates the input is not stored as part of the
+ * string.  The ReadLine function returns NULL if infile
+ * is at the end-of-file position.
+ */
+
+string ReadLine(FILE *infile);
+
+#endif

fftma_module/gen/LIBCS106X/stack.c

@@ -0,0 +1,122 @@
+/*
+ * File: stack.c
+ * -------------
+ * This file implements the stack.h interface.  Note that the
+ * implementation is independent of the type of value stored
+ * in the stack.  That type is defined by the interface as
+ * the type name stackElementT.
+ */
+
+#include <stdio.h>
+#include "genlib.h"
+#include "stack.h"
+
+/*
+ * Constant: InitialStackSize
+ * --------------------------
+ * This constant defines the initial size of the stack array.
+ * Any positive value will work correctly, although changing
+ * this parameter can affect performance.  Making this value
+ * larger postpones the first reallocation but causes stacks
+ * to consume more memory.
+ */
+
+#define InitialStackSize 100
+
+/*
+ * Type: stackCDT
+ * --------------
+ * The type stackCDT is the concrete representation of the type
+ * stackADT defined by the interface.  In this implementation,
+ * the elements are stored in a dynamic array that doubles in
+ * size if the old stack becomes full.
+ */
+
+struct stackCDT {
+    stackElementT *elements;
+    int count;
+    int size;
+};
+
+/* Private function prototypes */
+
+static void ExpandStack(stackADT stack);
+
+/* Exported entries */
+
+stackADT NewStack(void)
+{
+    stackADT stack;
+
+    stack = New(stackADT);
+    stack->elements = NewArray(InitialStackSize, stackElementT);
+    stack->count = 0;
+    stack->size = InitialStackSize;
+    return (stack);
+}
+
+void FreeStack(stackADT stack)
+{
+    FreeBlock(stack->elements);
+    FreeBlock(stack);
+}
+
+void Push(stackADT stack, stackElementT element)
+{
+    if (stack->count == stack->size) ExpandStack(stack);
+    stack->elements[stack->count++] = element;
+}
+
+stackElementT Pop(stackADT stack)
+{
+    if (StackIsEmpty(stack)) Error("Pop of an empty stack");
+    return (stack->elements[--stack->count]);
+}
+
+bool StackIsEmpty(stackADT stack)
+{
+    return (stack->count == 0);
+}
+
+bool StackIsFull(stackADT stack)
+{
+    return (FALSE);
+}
+
+int StackDepth(stackADT stack)
+{
+    return (stack->count);
+}
+
+stackElementT GetStackElement(stackADT stack, int index)
+{
+    if (index < 0 || index >= stack->count) {
+        Error("Non-existent stack element");
+    }
+    return (stack->elements[stack->count - index - 1]);
+}
+
+/* Private functions */
+
+/* Function: ExpandStack
+ * Usage: ExpandStack(stack);
+ * --------------------------
+ * This function expands a full stack by doubling the size of its
+ * dynamic array, copying the old elements to the new array, and
+ * then freeing the old array storage.
+ */
+
+static void ExpandStack(stackADT stack)
+{
+    stackElementT *array;
+    int i, newSize;
+
+    newSize = stack->size * 2;
+    array = NewArray(newSize, stackElementT);
+    for (i = 0; i < stack->size; i++) {
+        array[i] = stack->elements[i];
+    }
+    FreeBlock(stack->elements);
+    stack->elements = array;
+    stack->size = newSize;
+}

fftma_module/gen/LIBCS106X/stack.h

@@ -0,0 +1,115 @@
+/*
+ * File: stack.h
+ * -------------
+ * This interface defines an abstraction for stacks.  In any
+ * single application that uses this interface, the values in
+ * the stack are constrained to a single type, although it
+ * is easy to change that type by changing the definition of
+ * stackElementT in this interface.
+ */
+
+#ifndef _stack_h
+#define _stack_h
+
+#include "genlib.h"
+
+/*
+ * Type: stackElementT
+ * -------------------
+ * The type stackElementT is used in this interface to indicate
+ * the type of values that can be stored in the stack.  Here the
+ * stack is used to store values of type double, but that can
+ * be changed by editing this definition line.
+ */
+
+typedef void *stackElementT;
+
+/*
+ * Type: stackADT
+ * --------------
+ * The type stackADT represents the abstract type used to store
+ * the elements that have been pushed.  Because stackADT is
+ * defined only as a pointer to a concrete structure that is not
+ * itself defined in the interface, clients have no access to
+ * the underlying fields.
+ */
+
+typedef struct stackCDT *stackADT;
+
+/*
+ * Function: NewStack
+ * Usage: stack = NewStack();
+ * --------------------------
+ * This function allocates and returns a new stack, which is
+ * initially empty.
+ */
+
+stackADT NewStack(void);
+
+/*
+ * Function: FreeStack
+ * Usage: FreeStack(stack);
+ * ------------------------
+ * This function frees the storage associated with the stack.
+ */
+
+void FreeStack(stackADT stack);
+
+/*
+ * Function: Push
+ * Usage: Push(stack, element);
+ * ----------------------------
+ * This function pushes the specified element onto the stack.
+ */
+
+void Push(stackADT stack, stackElementT element);
+
+/*
+ * Function: Pop
+ * Usage: element = Pop(stack);
+ * ----------------------------
+ * This function pops the top element from the stack and returns
+ * that value.  The first value popped is always the last one
+ * that was pushed.  If the stack is empty when Pop is called,
+ * the function calls Error with an appropriate message.
+ */
+
+stackElementT Pop(stackADT stack);
+
+/*
+ * Functions: StackIsEmpty, StackIsFull
+ * Usage: if (StackIsEmpty(stack)) . . .
+ *        if (StackIsFull(stack)) . . .
+ * -------------------------------------
+ * This functions test whether the stack is empty or full.
+ */
+
+bool StackIsEmpty(stackADT stack);
+bool StackIsFull(stackADT stack);
+
+/*
+ * Function: StackDepth
+ * Usage: depth = StackDepth(stack);
+ * ---------------------------------
+ * This function returns the number of elements currently pushed
+ * on the stack.
+ */
+
+int StackDepth(stackADT stack);
+
+/*
+ * Function: GetStackElement
+ * Usage: element = GetStackElement(stack, index);
+ * -----------------------------------------------
+ * This function returns the element at the specified index in
+ * the stack, where the top of the stack is defined as index 0.
+ * For example, calling GetStackElement(stack, 0) returns the top
+ * element on the stack without removing it.  If the caller tries
+ * to select an out-of-range element, GetStackElement calls Error.
+ * Note: This function is not a fundamental stack operation and
+ * is instead provided principally to facilitate debugging.
+ */
+
+stackElementT GetStackElement(stackADT stack, int index);
+
+#endif

fftma_module/gen/LIBCS106X/strlib.c

@@ -0,0 +1,246 @@
+/*
+ * File: strlib.c
+ * Version: 1.0
+ * Last modified on Fri Jul 15 14:10:41 1994 by eroberts
+ * -----------------------------------------------------
+ * This file implements the strlib.h interface.
+ */
+
+/*
+ * General implementation notes:
+ * -----------------------------
+ * This module implements the strlib library by mapping all
+ * functions into the appropriate calls to the ANSI <string.h>
+ * interface.  The implementations of the individual functions
+ * are all quite simple and do not require individual comments.
+ * For descriptions of the behavior of each function, see the
+ * interface.
+ */
+
+#include <stdio.h>
+#include <string.h>
+#include <ctype.h>
+
+#include "genlib.h"
+#include "strlib.h"
+
+/*
+ * Constant: MaxDigits
+ * -------------------
+ * This constant must be larger than the maximum
+ * number of digits that can appear in a number.
+ */
+
+#define MaxDigits 30
+
+/* Private function prototypes */
+
+static string CreateString(int len);
+
+/* Section 1 -- Basic string operations */
+
+string Concat(string s1, string s2)
+{
+    string s;
+    int len1, len2;
+
+    if (s1 == NULL || s2 == NULL) {
+        Error("NULL string passed to Concat");
+    }
+    len1 = strlen(s1);
+    len2 = strlen(s2);
+    s = CreateString(len1 + len2);
+    strcpy(s, s1);
+    strcpy(s + len1, s2);
+    return (s);
+}
+
+char IthChar(string s, int i)
+{
+    int len;
+
+    if (s == NULL) Error("NULL string passed to IthChar");
+    len = strlen(s);
+    if (i < 0 || i > len) {
+        Error("Index outside of string range in IthChar");
+    }
+    return (s[i]);
+}
+
+string SubString(string s, int p1, int p2)
+{
+    int len;
+    string result;
+
+    if (s == NULL) Error("NULL string passed to SubString");
+    len = strlen(s);
+    if (p1 < 0) p1 = 0;
+    if (p2 >= len) p2 = len - 1;
+    len = p2 - p1 + 1;
+    if (len < 0) len = 0;
+    result = CreateString(len);
+    strncpy(result, s + p1, len);
+    result[len] = '\0';
+    return (result);
+}
+
+string CharToString(char ch)
+{
+    string result;
+
+    result = CreateString(1);
+    result[0] = ch;
+    result[1] = '\0';
+    return (result);
+}
+
+int StringLength(string s)
+{
+    if (s == NULL) Error("NULL string passed to StringLength");
+    return (strlen(s));
+}
+
+string CopyString(string s)
+{
+    string newstr;
+
+    if (s == NULL) Error("NULL string passed to CopyString");
+    newstr = CreateString(strlen(s));
+    strcpy(newstr, s);
+    return (newstr);
+}
+
+/* Section 2 -- String comparison functions */
+
+bool StringEqual(string s1, string s2)
+{
+    if (s1 == NULL || s2 == NULL) {
+        Error("NULL string passed to StringEqual");
+    }
+    return (strcmp(s1, s2) == 0);
+}
+
+int StringCompare(string s1, string s2)
+{
+    if (s1 == NULL || s2 == NULL) {
+        Error("NULL string passed to StringCompare");
+    }
+    return (strcmp(s1, s2));
+}
+
+/* Section 3 -- Search functions */
+
+int FindChar(char ch, string text, int start)
+{
+    char *cptr;
+
+    if (text == NULL) Error("NULL string passed to FindChar");
+    if (start < 0) start = 0;
+    if (start > strlen(text)) return (-1);
+    cptr = strchr(text + start, ch);
+    if (cptr == NULL) return (-1);
+    return ((int) (cptr - text));
+}
+
+int FindString(string str, string text, int start)
+{
+    char *cptr;
+
+    if (str == NULL) Error("NULL pattern string in FindString");
+    if (text == NULL) Error("NULL text string in FindString");
+    if (start < 0) start = 0;
+    if (start > strlen(text)) return (-1);
+    cptr = strstr(text + start, str);
+    if (cptr == NULL) return (-1);
+    return ((int) (cptr - text));
+}
+
+/* Section 4 -- Case-conversion functions */
+
+string ConvertToLowerCase(string s)
+{
+    string result;
+    int i;
+
+    if (s == NULL) {
+        Error("NULL string passed to ConvertToLowerCase");
+    }
+    result = CreateString(strlen(s));
+    for (i = 0; s[i] != '\0'; i++) result[i] = tolower(s[i]);
+    result[i] = '\0';
+    return (result);
+}
+
+string ConvertToUpperCase(string s)
+{
+    string result;
+    int i;
+
+    if (s == NULL) {
+        Error("NULL string passed to ConvertToUpperCase");
+    }
+    result = CreateString(strlen(s));
+    for (i = 0; s[i] != '\0'; i++) result[i] = toupper(s[i]);
+    result[i] = '\0';
+    return (result);
+}
+
+/* Section 5 -- Functions for converting numbers to strings */
+
+string IntegerToString(int n)
+{
+    char buffer[MaxDigits];
+
+    sprintf(buffer, "%d", n);
+    return (CopyString(buffer));
+}
+
+int StringToInteger(string s)
+{
+    int result;
+    char dummy;
+
+    if (s == NULL) {
+        Error("NULL string passed to StringToInteger");
+    }
+    if (sscanf(s, " %d %c", &result, &dummy) != 1) {
+        Error("StringToInteger called on illegal number %s", s);
+    }
+    return (result);
+}
+
+string RealToString(double d)
+{
+    char buffer[MaxDigits];
+
+    sprintf(buffer, "%G", d);
+    return (CopyString(buffer));
+}
+
+double StringToReal(string s)
+{
+    double result;
+    char dummy;
+
+    if (s == NULL) Error("NULL string passed to StringToReal");
+    if (sscanf(s, " %lg %c", &result, &dummy) != 1) {
+        Error("StringToReal called on illegal number %s", s);
+    }
+    return (result);
+}
+
+/* Private functions */
+
+/*
+ * Function: CreateString
+ * Usage: s = CreateString(len);
+ * -----------------------------
+ * This function dynamically allocates space for a string of
+ * len characters, leaving room for the null character at the
+ * end.
+ */
+
+static string CreateString(int len)
+{
+    return ((string) GetBlock(len + 1));
+}

fftma_module/gen/LIBCS106X/strlib.h

@@ -0,0 +1,243 @@
+/*
+ * File: strlib.h
+ * Version: 1.0
+ * Last modified on Fri Jul 15 14:10:40 1994 by eroberts
+ * -----------------------------------------------------
+ * The strlib.h file defines the interface for a simple
+ * string library.  In the context of this package, strings
+ * are considered to be an abstract data type, which means
+ * that the client relies only on the operations defined for
+ * the type and not on the underlying representation.
+ */
+
+/*
+ * Cautionary note:
+ * ----------------
+ * Although this interface provides an extremely convenient
+ * abstraction for working with strings, it is not appropriate
+ * for all applications.  In this interface, the functions that
+ * return string values (such as Concat and SubString) do so
+ * by allocating new memory.  Over time, a program that uses
+ * this package will consume increasing amounts of memory
+ * and eventually exhaust the available supply.  If you are
+ * writing a program that runs for a short time and stops,
+ * the fact that the package consumes memory is not a problem.
+ * If, however, you are writing an application that must run
+ * for an extended period of time, using this package requires
+ * that you make some provision for freeing any allocated
+ * storage.
+ */
+
+#ifndef _strlib_h
+#define _strlib_h
+
+#include "genlib.h"
+
+/* Section 1 -- Basic string operations */
+
+/*
+ * Function: Concat
+ * Usage: s = Concat(s1, s2);
+ * --------------------------
+ * This function concatenates two strings by joining them end
+ * to end.  For example, Concat("ABC", "DE") returns the string
+ * "ABCDE".
+ */
+
+string Concat(string s1, string s2);
+
+/*
+ * Function: IthChar
+ * Usage: ch = IthChar(s, i);
+ * --------------------------
+ * This function returns the character at position i in the
+ * string s.  It is included in the library to make the type
+ * string a true abstract type in the sense that all of the
+ * necessary operations can be invoked using functions. Calling
+ * IthChar(s, i) is like selecting s[i], except that IthChar
+ * checks to see if i is within the range of legal index
+ * positions, which extend from 0 to StringLength(s).
+ * IthChar(s, StringLength(s)) returns the null character
+ * at the end of the string.
+ */
+
+char IthChar(string s, int i);
+
+/*
+ * Function: SubString
+ * Usage: t = SubString(s, p1, p2);
+ * --------------------------------
+ * SubString returns a copy of the substring of s consisting
+ * of the characters between index positions p1 and p2,
+ * inclusive.  The following special cases apply:
+ *
+ * 1. If p1 is less than 0, it is assumed to be 0.
+ * 2. If p2 is greater than the index of the last string
+ *    position, which is StringLength(s) - 1, then p2 is
+ *    set equal to StringLength(s) - 1.
+ * 3. If p2 < p1, SubString returns the empty string.
+ */
+
+string SubString(string s, int p1, int p2);
+
+/*
+ * Function: CharToString
+ * Usage: s = CharToString(ch);
+ * ----------------------------
+ * This function takes a single character and returns a
+ * one-character string consisting of that character.  The
+ * CharToString function is useful, for example, if you
+ * need to concatenate a string and a character.  Since
+ * Concat requires two strings, you must first convert
+ * the character into a string.
+ */
+
+string CharToString(char ch);
+
+/*
+ * Function: StringLength
+ * Usage: len = StringLength(s);
+ * -----------------------------
+ * This function returns the length of s.
+ */
+
+int StringLength(string s);
+
+/*
+ * Function: CopyString
+ * Usage: newstr = CopyString(s);
+ * ------------------------------
+ * CopyString copies the string s into dynamically allocated
+ * storage and returns the new string.  This function is not
+ * ordinarily required if this package is used on its own,
+ * but is often necessary when you are working with more than
+ * one string package.
+ */
+
+string CopyString(string s);
+
+/* Section 2 -- String comparison functions */
+
+/*
+ * Function: StringEqual
+ * Usage: if (StringEqual(s1, s2)) ...
+ * -----------------------------------
+ * This function returns TRUE if the strings s1 and s2 are
+ * equal.  For the strings to be considered equal, every
+ * character in one string must precisely match the
+ * corresponding character in the other.  Uppercase and
+ * lowercase characters are considered to be different.
+ */
+
+bool StringEqual(string s1, string s2);
+
+/*
+ * Function: StringCompare
+ * Usage: if (StringCompare(s1, s2) < 0) ...
+ * -----------------------------------------
+ * This function returns a number less than 0 if string s1
+ * comes before s2 in alphabetical order, 0 if they are equal,
+ * and a number greater than 0 if s1 comes after s2.  The
+ * ordering is determined by the internal representation used
+ * for characters, which is usually ASCII.
+ */
+
+int StringCompare(string s1, string s2);
+
+/* Section 3 -- Search functions */
+
+/*
+ * Function: FindChar
+ * Usage: p = FindChar(ch, text, start);
+ * -------------------------------------
+ * Beginning at position start in the string text, this
+ * function searches for the character ch and returns the
+ * first index at which it appears or -1 if no match is
+ * found.
+ */
+
+int FindChar(char ch, string text, int start);
+
+/*
+ * Function: FindString
+ * Usage: p = FindString(str, text, start);
+ * ----------------------------------------
+ * Beginning at position start in the string text, this
+ * function searches for the string str and returns the
+ * first index at which it appears or -1 if no match is
+ * found.
+ */
+
+int FindString(string str, string text, int start);
+
+/* Section 4 -- Case-conversion functions */
+
+/*
+ * Function: ConvertToLowerCase
+ * Usage: s = ConvertToLowerCase(s);
+ * ---------------------------------
+ * This function returns a new string with all
+ * alphabetic characters converted to lower case.
+ */
+
+string ConvertToLowerCase(string s);
+
+/*
+ * Function: ConvertToUpperCase
+ * Usage: s = ConvertToUpperCase(s);
+ * ---------------------------------
+ * This function returns a new string with all
+ * alphabetic characters converted to upper case.
+ */
+
+string ConvertToUpperCase(string s);
+
+/* Section 5 -- Functions for converting numbers to strings */
+
+/*
+ * Function: IntegerToString
+ * Usage: s = IntegerToString(n);
+ * ------------------------------
+ * This function converts an integer into the corresponding
+ * string of digits.  For example, IntegerToString(123)
+ * returns "123" as a string.
+ */
+
+string IntegerToString(int n);
+
+/*
+ * Function: StringToInteger
+ * Usage: n = StringToInteger(s);
+ * ------------------------------
+ * This function converts a string of digits into an integer.
+ * If the string is not a legal integer or contains extraneous
+ * characters, StringToInteger signals an error condition.
+ */
+
+int StringToInteger(string s);
+
+/*
+ * Function: RealToString
+ * Usage: s = RealToString(d);
+ * ---------------------------
+ * This function converts a floating-point number into the
+ * corresponding string form.  For example, calling
+ * RealToString(23.45) returns "23.45".  The conversion is
+ * the same as that used for "%G" format in printf.
+ */
+
+string RealToString(double d);
+
+/*
+ * Function: StringToReal
+ * Usage: d = StringToReal(s);
+ * ---------------------------
+ * This function converts a string representing a real number
+ * into its corresponding value.  If the string is not a
+ * legal floating-point number or if it contains extraneous
+ * characters, StringToReal signals an error condition.
+ */
+
+double StringToReal(string s);
+
+#endif

fftma_module/gen/LIBCS106X/symtab.c

@@ -0,0 +1,180 @@
+/*
+ * File: symtab.c
+ * --------------
+ * This file implements the symbol table abstraction.
+ */
+
+#include <stdio.h>
+#include "genlib.h"
+#include "strlib.h"
+#include "symtab.h"
+
+/*
+ * Constants
+ * ---------
+ * NBuckets -- Number of buckets in the hash table
+ */
+
+#define NBuckets 101
+
+/*
+ * Type: cellT
+ * -----------
+ * This type defines a linked list cell for the symbol table.
+ */
+
+typedef struct cellT {
+    string key;
+    void *value;
+    struct cellT *link;
+} cellT;
+
+/*
+ * Type: symtabCDT
+ * ---------------
+ * This type defines the underlying concrete representation for a
+ * symtabADT.  These details are not relevant to and therefore
+ * not exported to the client.  In this implementation, the
+ * underlying structure is a hash table organized as an array of
+ * "buckets," in which each bucket is a linked list of elements
+ * that share the same hash code.
+ */
+
+struct symtabCDT {
+    cellT *buckets[NBuckets];
+};
+
+/* Private function declarations */
+
+static void FreeBucketChain(cellT *cp);
+static cellT *FindCell(cellT *cp, string s);
+static int Hash(string s, int nBuckets);
+
+/* Public entries */
+
+symtabADT NewSymbolTable(void)
+{
+    symtabADT table;
+    int i;
+
+    table = New(symtabADT);
+    for (i = 0; i < NBuckets; i++) {
+        table->buckets[i] = NULL;
+    }
+    return (table);
+}
+
+void FreeSymbolTable(symtabADT table)
+{
+    int i;
+
+    for (i = 0; i < NBuckets; i++) {
+        FreeBucketChain(table->buckets[i]);
+    }
+    FreeBlock(table);
+}
+
+void Enter(symtabADT table, string key, void *value)
+{
+    int bucket;
+    cellT *cp;
+
+    bucket = Hash(key, NBuckets);
+    cp = FindCell(table->buckets[bucket], key);
+    if (cp == NULL) {
+        cp = New(cellT *);
+        cp->key = CopyString(key);
+        cp->link = table->buckets[bucket];
+        table->buckets[bucket] = cp;
+    }
+    cp->value = value;
+}
+
+void *Lookup(symtabADT table, string key)
+{
+    int bucket;
+    cellT *cp;
+
+    bucket = Hash(key, NBuckets);
+    cp = FindCell(table->buckets[bucket], key);
+    if (cp == NULL) return(UNDEFINED);
+    return (cp->value);
+}
+
+void MapSymbolTable(symtabFnT fn, symtabADT table,
+                    void *clientData)
+{
+    int i;
+    cellT *cp;
+
+    for (i = 0; i < NBuckets; i++) {
+        for (cp = table->buckets[i]; cp != NULL; cp = cp->link) {
+            fn(cp->key, cp->value, clientData);
+        }
+    }
+}
+
+/* Private functions */
+
+/*
+ * Function: FreeBucketChain
+ * Usage: FreeBucketChain(cp);
+ * ---------------------------
+ * This function takes a chain pointer and frees all the cells
+ * in that chain.  Because the package makes copies of the keys,
+ * this function must free the string storage as well.
+ */
+
+static void FreeBucketChain(cellT *cp)
+{
+    cellT *next;
+
+    while (cp != NULL) {
+        next = cp->link;
+        FreeBlock(cp->key);
+        FreeBlock(cp);
+        cp = next;
+    }
+}
+
+/*
+ * Function: FindCell
+ * Usage: cp = FindCell(cp, key);
+ * ------------------------------
+ * This function finds a cell in the chain beginning at cp that
+ * matches key.  If a match is found, a pointer to that cell is
+ * returned.  If no match is found, the function returns NULL.
+ */
+
+static cellT *FindCell(cellT *cp, string key)
+{
+    while (cp != NULL && !StringEqual(cp->key, key)) {
+        cp = cp->link;
+    }
+    return (cp);
+}
+
+/*
+ * Function: Hash
+ * Usage: bucket = Hash(key, nBuckets);
+ * ------------------------------------
+ * This function takes the key and uses it to derive a hash code,
+ * which is an integer in the range [0, nBuckets - 1].  The hash
+ * code is computed using a method called linear congruence.  The
+ * choice of the value for Multiplier can have a significant effect
+ * on the performance of the algorithm, but not on its correctness.
+ */
+
+#define Multiplier -1664117991L
+
+static int Hash(string s, int nBuckets)
+{
+    int i;
+    unsigned long hashcode;
+
+    hashcode = 0;
+    for (i = 0; s[i] != '\0'; i++) {
+        hashcode = hashcode * Multiplier + s[i];
+    }
+    return (hashcode % nBuckets);
+}

fftma_module/gen/LIBCS106X/symtab.h

@@ -0,0 +1,85 @@
+/*
+ * File: symtab.h
+ * --------------
+ * This interface exports a simple symbol table abstraction.
+ */
+
+#ifndef _symtab_h
+#define _symtab_h
+
+#include "genlib.h"
+
+/*
+ * Type: symtabADT
+ * ---------------
+ * This type is the ADT used to represent a symbol table.
+ */
+
+typedef struct symtabCDT *symtabADT;
+
+/*
+ * Type: symtabFnT
+ * ---------------
+ * This type defines the class of functions that can be used to
+ * map over the entries in a symbol table.
+ */
+
+typedef void (*symtabFnT)(string key, void *value,
+                          void *clientData);
+
+/* Exported entries */
+
+/*
+ * Function: NewSymbolTable
+ * Usage: table = NewSymbolTable();
+ * --------------------------------
+ * This function allocates a new symbol table with no entries.
+ */
+
+symtabADT NewSymbolTable(void);
+
+/*
+ * Function: FreeSymbolTable
+ * Usage: FreeSymbolTable(table);
+ * ------------------------------
+ * This function frees the storage associated with the symbol table.
+ */
+
+void FreeSymbolTable(symtabADT table);
+
+/*
+ * Function: Enter
+ * Usage: Enter(table, key, value);
+ * --------------------------------
+ * This function associates key with value in the symbol table.
+ * Each call to Enter supersedes any previous definition for key.
+ */
+
+void Enter(symtabADT table, string key, void *value);
+
+/*
+ * Function: Lookup
+ * Usage: value = Lookup(table, key);
+ * ----------------------------------
+ * This function returns the value associated with key in the symbol
+ * table, or UNDEFINED, if no such value exists.
+ */
+
+void *Lookup(symtabADT table, string key);
+
+/*
+ * Function: MapSymbolTable
+ * Usage: MapSymbolTable(fn, table, clientData);
+ * ---------------------------------------------
+ * This function goes through every entry in the symbol table
+ * and calls the function fn, passing it the following arguments:
+ * the current key, its associated value, and the clientData
+ * pointer.  The clientData pointer allows the client to pass
+ * additional state information to the function fn, if necessary.
+ * If no clientData argument is required, this value should be NULL.
+ */
+
+void MapSymbolTable(symtabFnT fn, symtabADT table,
+                    void *clientData);
+
+#endif

fftma_module/gen/LIBFFTMA/Makefile.libFFTMA

@@ -0,0 +1,30 @@
+
+########################################################################
+#
+#   Makefile for library
+#
+########################################################################
+
+
+INTERFACE = ../include
+INCLUDE = -I${INTERFACE}
+LIBS =  -lm -L../lib
+CC = cc
+CCFLAGS = 
+
+LIB = libFFTMA_${ARCH}.a
+
+NOBJS= gammf.o fftma.o addstat.o axes.o cgrid.o covariance.o fourt.o length.o maxfactor.o test_fact.o cov_value.o generate.o gasdev.o ran2.o stable.o gaussian.o power.o cubic.o spherical.o nugget.o exponential.o cardsin.o nor2log.o
+
+
+.c.o: 
+	${CC} $(INCLUDE) $(CCFLAGS) -c $< 
+
+# LIBRARY
+$(LIB) : $(NOBJS) 
+	 ar cr $(LIB) $(NOBJS)
+	 ranlib $(LIB)
+
+clean : 
+	rm *.o
+

fftma_module/gen/LIBFFTMA/addstat.c

@@ -0,0 +1,106 @@
+#include <stdio.h>
+#include <math.h>
+#include "geostat.h"
+#include "genlib.h"
+
+
+/*addstat                                                 */
+/*adds mean and variance effects to the N(0,1) realization*/
+/*input:                                                  */
+/*realin: structure defining a realization -              */
+/*        must have zeio mean and unit variance           */
+/*stat: structure defining the mean and variance          */
+/*output:                                                 */
+/*realout: structure defining a realization -             */
+void addstat(struct realization_mod *realin,struct statistic_mod stat ,struct realization_mod *realout)
+
+{
+
+  int i,nblockm,nblockv;
+  double r,moy,var;
+
+  /*Is the output realization allocated ?*/
+  /*is its length equal to realin.n?*/
+  if ((*realout).vector == NULL || (*realout).n != (*realin).n) {
+    (*realout).vector = (double *) malloc((*realin).n * sizeof(double));
+    if ((*realout).vector == NULL)
+      Error("No memory available");
+  }
+  (*realout).n = (*realin).n;
+
+
+  /*test over the input realization*/
+  switch ((*realin).code) {
+  case 0:
+  case 1:
+    (*realout).code = 2;
+    break;
+  case 6:
+    (*realout).code = 7;
+    break;
+  default:
+    (*realout).code = (*realin).code;
+    break;
+  }
+
+  for (i = 0; i < (*realin).n; i++) {
+
+
+    /*mean*/
+    switch (stat.nblock_mean) {
+    case 1:
+      /*stationary case*/
+      nblockm = 1;
+      break;
+    default:
+      /*number of the cell - nonstationary case*/
+      nblockm = i+1;
+      break;
+    }
+
+
+    /*variance*/
+    switch (stat.nblock_var) {
+    case 1:
+      /*stationary case*/
+      nblockv = 1;
+      break;
+    default:
+      /*number of the cell - nonstationary case*/
+      nblockv = i+1;
+      break;
+    }
+
+
+    switch (stat.type) {
+    case 0:
+      /*normal case*/
+      moy = stat.mean[nblockm-1];
+      var = stat.variance[nblockv-1];
+      break;
+    case 1:
+      /*lognormal (natural) case*/
+      r = (double)sqrt(stat.variance[nblockv-1])/stat.mean[nblockm-1];
+      r *= r;
+      moy = (double)log(stat.mean[nblockm-1]/sqrt(1.0+r));
+      var = (double)log(1.0+r);
+      break;
+    case 2:
+      /*lognormal (log10) case*/
+      r = (double)sqrt(stat.variance[nblockv-1])/stat.mean[nblockm-1];
+      r *= r;
+      moy = (double)log10(stat.mean[nblockm-1]/sqrt(1.0+r));
+      var = (double)log10(1.0+r);
+      break;
+    default:  
+      Error("Type not defined in addstat");
+      break;
+    }
+
+ 
+
+    (*realout).vector[i] = (double)sqrt(var)*(*realin).vector[i]+moy;
+  }
+
+  return;
+}

fftma_module/gen/LIBFFTMA/axes.c

@@ -0,0 +1,41 @@
+#include <math.h>
+#include <stdlib.h>
+
+/*normalizes anisotropy axes*/
+void axes(double *ap,double *scf,int N)
+{
+  double sclpdt, r, eps = 1.E-6;
+  int i,j,k;
+
+
+  for (k = 0; k < N; k++) {
+
+    r = sqrt(ap[9*k]*ap[9*k]+ap[9*k+1]*ap[9*k+1]+ap[9*k+2]*ap[9*k+2]);
+    ap[9*k] /= r;
+    ap[9*k+1] /= r;
+    ap[9*k+2] /= r;
+    sclpdt = ap[9*k]*ap[9*k+3]+ap[9*k+1]*ap[9*k+4]+ap[9*k+2]*ap[9*k+5];
+    if (sclpdt > eps) { 
+      printf("Non orthogonal axes");
+      exit;
+    } else {
+      r = sqrt(ap[9*k+3]*ap[9*k+3]+ap[9*k+4]*ap[9*k+4]+ap[9*k+5]*ap[9*k+5]);
+      ap[9*k+3] /= r;
+      ap[9*k+4] /= r;
+      ap[9*k+5] /= r;
+      ap[9*k+6] = ap[9*k+1]*ap[9*k+5]-ap[9*k+2]*ap[9*k+4];
+      ap[9*k+7] = ap[9*k+2]*ap[9*k+3]-ap[9*k]*ap[9*k+5];
+      ap[9*k+8] = ap[9*k]*ap[9*k+4]-ap[9*k+1]*ap[9*k+3];
+      for (i=0; i<3; i++) {
+	for (j=0; j<3; j++) {
+	  if (scf[3*k+j] == 0.)
+	    scf[3*k+j] = 1.;
+	  ap[9*k+3*j+i] /= scf[3*k+j];
+	}
+      }
+    }
+    
+  }
+  return;
+}
+

fftma_module/gen/LIBFFTMA/cardsin.c

@@ -0,0 +1,18 @@
+#include <stdio.h>
+#include <math.h>
+#include "genlib.h"
+
+/*cardsin covariance function*/
+double cardsin(double h)
+{
+  float delta = 20.371;
+  double z;
+
+  if (h != 0) {
+    z = (double)(h*delta);
+    z = sin(z)/z;
+  } else {
+    z = 1.;
+  }
+  return(z);
+}

fftma_module/gen/LIBFFTMA/cgrid.c

@@ -0,0 +1,43 @@
+#include <stdlib.h>
+#include "geostat.h"
+
+
+/*computes the size of the grid for FFTs*/
+/*input:                                           */
+/*variogram: structure defining the variogram model*/
+/*grid: structure defining the actual grid         */
+/*output:                                          */
+/*n: vector with the number of cells along the     */
+/*   X, Y and Z axes for the underlying grid       */
+/*   i = [0 1 2]                                   */
+void cgrid(struct vario_mod variogram, struct grid_mod grid, int n[3])
+{
+  int i,N;
+  double D;
+  
+  if (n == NULL || n[0] == 0 || n[1] == 0 || n[2] == 0) {
+    for (i = 0; i<3; i++) {
+      switch (i) {
+      case 0: 
+	N = grid.NX;
+	D = grid.DX;
+	break;
+      case 1:
+	N = grid.NY;
+	D = grid.DY;
+	break;
+      case 2:
+	N = grid.NZ;
+	D = grid.DZ;
+	break;
+      }
+      n[i] = length(N,i,variogram.scf,variogram.ap,D,variogram.Nvario);
+    }
+  } else {
+    if ((n[0]<grid.NX) || (n[1]<grid.NY) || (n[2]<grid.NZ)) {
+      printf("Indicated dimensions are inappropriate in cgrid");
+      exit;
+    }
+  }
+  return;
+}

fftma_module/gen/LIBFFTMA/cov_value.c

@@ -0,0 +1,55 @@
+#include <math.h>
+#include "geostat.h"
+#include "genlib.h"
+
+/*selection of model covariance*/
+double cov_value(struct vario_mod variogram,double di,double dj,double dk)
+{
+  double hx,hy,hz,h;
+  double cov;
+  int k;
+
+
+  cov = 0.;
+
+  for (k = 0; k < variogram.Nvario; k++) {
+
+    hx = di*variogram.ap[9*k]+dj*variogram.ap[9*k+1]+dk*variogram.ap[9*k+2];
+    hy = di*variogram.ap[9*k+3]+dj*variogram.ap[9*k+4]+dk*variogram.ap[9*k+5];
+    hz = di*variogram.ap[9*k+6]+dj*variogram.ap[9*k+7]+dk*variogram.ap[9*k+8];
+    h = sqrt(hx*hx+hy*hy+hz*hz);
+
+
+    switch (variogram.vario[k]) {
+    case 1:
+      cov += variogram.var[k]*exponential(h);
+      break;
+    case 2:
+      cov += variogram.var[k]*gaussian(h);
+      break;
+    case 3:
+      cov += variogram.var[k]*spherical(h);
+      break;
+    case 4:
+      cov += variogram.var[k]*cardsin(h);
+      break;
+    case 5:
+      cov += variogram.var[k]*stable(h,variogram.alpha[k]);
+      break;
+    case 6:
+      cov += variogram.var[k]*gammf(h,variogram.alpha[k]);
+      break;
+    case 7:
+      cov += variogram.var[k]*cubic(h);
+      break;
+    case 8:
+      cov += variogram.var[k]*nugget(h);
+      break;
+    case 9:
+      cov += variogram.var[k]*power(h,variogram.alpha[k]);
+      break;
+    }
+  }
+
+  return (cov);
+}

fftma_module/gen/LIBFFTMA/covariance.c

@@ -0,0 +1,90 @@
+#include "geostat.h"
+
+/*builds the sampled covariance function*/
+/*dimensions are even*/
+void covariance(double *covar, struct vario_mod variogram, struct grid_mod mesh, int n[3])
+
+{
+  int i,j,k,maille,n2[3],symmetric;
+  double di,dj,dk;
+  
+
+  for (i=0;i<3;i++) 
+    n2[i] = n[i]/2;
+
+  for (i=0; i<= n2[0]; i++) {
+    for (j=0; j<= n2[1]; j++) {
+      for (k=0; k<= n2[2]; k++) {
+    
+
+	/*area 1*/
+	maille = 1+i+n[0]*(j+n[1]*k);
+	di = (double)i*mesh.DX;
+	dj = (double)j*mesh.DY;
+	dk = (double)k*mesh.DZ;
+	covar[maille] = (double)cov_value(variogram,di,dj,dk);
+
+	
+	if (k > 0 && k <n2[2] && j > 0 && j <n2[1] && i > 0 && i <n2[0]) {
+	  /*area 2*/
+	  symmetric = 1+n[0]-i+n[0]*(n[1]-j+n[1]*(n[2]-k));
+	  covar[symmetric] = covar[maille];
+	}
+
+
+	if (i > 0 && i <n2[0]) {
+	  /*area 4*/
+	  di = -(double)i*mesh.DX;
+	  dj = (double)j*mesh.DY;
+	  dk = (double)k*mesh.DZ;
+	  maille = 1+(n[0]-i)+n[0]*(j+n[1]*k);
+	  covar[maille] = (double)cov_value(variogram,di,dj,dk);
+	}
+
+
+	if (k > 0 && k <n2[2] && j > 0 && j <n2[1]) {
+	  /*area 8*/
+	  symmetric = 1+i+n[0]*(n[1]-j+n[1]*(n[2]-k));
+	  covar[symmetric] = covar[maille];
+	}
+
+
+	if (i > 0 && i <n2[0] && j > 0 && j < n2[1]) {
+	  /*area 5*/
+	  di = -(double)i*mesh.DX;
+	  dj = -(double)j*mesh.DY;
+	  dk = (double)k*mesh.DZ;
+	  maille = 1+(n[0]-i)+n[0]*(n[1]-j+n[1]*k);
+	  covar[maille] = (double)cov_value(variogram,di,dj,dk);
+	}
+
+
+	if (k > 0 && k <n2[2]) {
+	  /*area 6*/
+	  symmetric = 1+i+n[0]*(j+n[1]*(n[2]-k));
+	  covar[symmetric] = covar[maille];
+	}
+
+
+	if (j > 0 && j < n2[1]) {
+	  /*area 3*/
+	  di = (double)i*mesh.DX;
+	  dj = -(double)j*mesh.DY;
+	  dk = (double)k*mesh.DZ;
+	  maille = 1+i+n[0]*(n[1]-j+n[1]*k);
+	  covar[maille] = (double)cov_value(variogram,di,dj,dk);
+	}
+
+
+	if (k > 0 && k <n2[2] && i > 0 && i <n2[0]) {
+	  /*area 7*/
+	  symmetric = 1+n[0]-i+n[0]*(j+n[1]*(n[2]-k));
+	  covar[symmetric] = covar[maille];
+	}
+
+      }
+    }
+  }
+
+  return;
+}

fftma_module/gen/LIBFFTMA/cubic.c

@@ -0,0 +1,17 @@
+#include <stdio.h>
+#include <math.h>
+#include "genlib.h"
+
+
+/*cubic covariance function*/
+double cubic(double h)
+{
+  double z;
+
+  if (h >= 1.) {
+    z = 0.;
+  } else {
+    z = 1.-7.*(double)(h*h)+(35./4.)*(double)(h*h*h)-3.5*(double)(h*h*h*h*h)+.75*(double)(h*h*h*h*h*h*h);
+  }
+  return (z);
+}

fftma_module/gen/LIBFFTMA/exponential.c

@@ -0,0 +1,9 @@
+#include <stdio.h>
+#include <math.h>
+#include "genlib.h"
+
+/*exponential covariance function*/
+double exponential(double h)
+{
+  return (exp(-3.*(double)h));
+}

fftma_module/gen/LIBFFTMA/fftma.c

@@ -0,0 +1,185 @@
+
+#include <stdlib.h>
+#include <math.h>
+#include "geostat.h"
+
+
+/*FAST FOURIER TRANSFORM MOVING AVERAGE METHOD */
+/*Turns a Gaussian white noise vector into a   */
+/*spatially correlated vector                  */
+/*input:                                       */
+/*variogram: structure defining the variogram  */
+/*           model                             */
+/*grid: structure defining the grid            */
+/*n: vector with the number of cells along the */
+/*   X, Y and Z axes for the underlying grid   */
+/*   i = [0 1 2]                               */
+/*   --> 0 0 0        : n will be computed and */
+/*   updated as output                         */
+/*   --> nx ny nz: these dimensions are used   */
+/*realin: structure defining a realization -   */
+/*        must be a Gaussian white noise       */
+/*output:                                      */
+/*realout: structure defining a realization -  */
+
+
+
+void FFTMA(struct vario_mod variogram,struct grid_mod grid,int n[3],struct realization_mod *realin,struct realization_mod *realout)
+
+{
+	int NTOT,i,j,k,NMAX,NDIM,ntot,nmax,NXYZ,nxyz,maille0,maille1;
+	double *table,*covar,*workr,*worki,*realization,temp;
+	
+	
+	/*test over the input realization*/
+	/*if ((*realin).code != 0) {
+	  printf("Input realizations in FFTMA must be Gaussian white noises");
+	  exit;
+	  }*/
+	
+	/*covariance axis normalization*/
+	axes(variogram.ap,variogram.scf,variogram.Nvario);
+	
+	
+	/*pseudo-grid definition*/
+	cgrid(variogram,grid,n);  
+	
+	
+	/*constant definition*/
+	NTOT = n[0]*n[1]*n[2];
+	ntot = NTOT+1;
+	NMAX = n[0];
+	NDIM = 3;
+	for (i=1;i<3;i++) {
+		if (n[i] > NMAX)
+			NMAX = n[i];
+		if (n[i] == 1)
+			NDIM--;
+	}
+	nmax = NMAX+1;
+	NXYZ = grid.NX*grid.NY*grid.NZ;
+	nxyz = NXYZ+1;
+	
+	
+	/*array initialization*/
+	covar = (double *) malloc(ntot * sizeof(double));
+	if (covar == NULL) {
+	  printf("FFTMA.c:  No memory available for covar");
+	  exit;
+	}
+
+	table = (double *) malloc(ntot * sizeof(double));
+	if (table == NULL) {
+	  printf("FFTMA.c:  No memory available for table");
+	  exit;
+	}
+
+	realization = (double *) malloc(ntot * sizeof(double));
+	if (realization == NULL) {
+	  printf("FFTMA.c:  No memory available for realization");
+	  exit;
+	}
+
+	workr = (double *) malloc(nmax * sizeof(double));
+	if (workr == NULL) {
+	  printf("FFTMA.c:  No memory available for workr");
+	  exit;
+	}
+
+	worki = (double *) malloc(nmax * sizeof(double));
+	if (worki == NULL) {
+	  printf("FFTMA.c:  No memory available for worki");
+	  exit;
+	}
+	
+	/*covariance function creation*/
+	covariance(covar,variogram,grid,n);
+	
+	
+	/*power spectrum*/
+	fourt(covar,table,n,NDIM,1,0,workr,worki);
+	
+	
+	/*organization of the input Gaussian white noise*/
+	for ( k = 1; k <= n[2]; k++) {
+	  for (j = 1; j <= n[1]; j++) {
+	    for (i = 1; i <= n[0]; i++) {
+	      maille1 = i+(j-1+(k-1)*n[1])*n[0];
+	      if (i <= grid.NX && j <= grid.NY && k <= grid.NZ) {
+		maille0 = i-1+(j-1+(k-1)*grid.NY)*grid.NX;
+		realization[maille1] = (*realin).vector[maille0];
+	      } else {
+		realization[maille1] = 0.;
+	      }
+	    }
+	  }
+	}
+	
+	
+	/*forward fourier transform of the GWN*/
+	fourt(realization,table,n,NDIM,1,0,workr,worki);
+	
+	
+	/*decomposition and multiplication in the spectral domain*/
+	for ( k = 1; k <= n[2]; k++) {
+	  for (j = 1; j <= n[1]; j++) {
+	    for (i = 1; i <= n[0]; i++) {
+	      maille1 = i+(j-1+(k-1)*n[1])*n[0];
+	      temp = covar[maille1];
+	      if (temp > 0.) {
+		temp = sqrt(temp)/(double) NTOT;
+	      } else if (temp < 0.) {
+		temp = sqrt(-temp)/(double) NTOT;
+	      }
+	      realization[maille1] *= temp;
+	      table[maille1] *= temp;
+	    }
+	  }
+	}
+	
+	
+	free(covar);
+	
+	
+	/*backward fourier transform*/
+	fourt(realization,table,n,NDIM,0,1,workr,worki);
+	
+	
+	free(table);
+	free(workr);
+	free(worki);
+	
+	
+	/*output realization*/
+	
+	/*is the output realization already allocated?*/
+	/*if not, memory allocation*/
+	if ((*realout).vector == NULL || (*realout).n != (*realin).n) {
+	  (*realout).vector = (double *) malloc((*realin).n * sizeof(double));
+	  if ((*realout).vector == NULL) {
+	    printf("FFTMA.c:  No memory available");
+	    exit;
+	  }
+	}
+	(*realout).n = (*realin).n;
+	(*realout).code = 1;
+	for ( k = 1; k <= grid.NZ; k++) {
+	  for (j = 1; j <= grid.NY; j++) {
+	    for (i = 1; i <= grid.NX; i++) {
+	      maille1 = i+(j-1+(k-1)*n[1])*n[0];
+	      maille0 = i-1+(j-1+(k-1)*grid.NY)*grid.NX;
+	      (*realout).vector[maille0] = realization[maille1];
+	    }
+	  }
+	}
+	
+	
+	free(realization);
+	
+	
+	return;
+}
+
+
+
+

fftma_module/gen/LIBFFTMA/fourt.c

@@ -0,0 +1,591 @@
+#include <stdio.h>
+#include <math.h>
+
+/*fast fourier transform                                                   */
+/*     THE COOLEY-TUKEY FAST FOURIER TRANSFORM                             */
+/*     EVALUATES COMPLEX FOURIER SERIES FOR COMPLEX OR REAL FUNCTIONS.     */
+/*     THAT IS, IT COMPUTES                                                */
+/*     FTRAN(J1,J2,...)=SUM(DATA(I1,I2,...)*W1**(I1-1)*(J1-1)              */
+/*                                         *W2**(I2-1)*(J2-1)*...),        */
+/*     WHERE W1=EXP(-2*PI*SQRT(-1)/NN(1)), W2=EXP(-2*PI*SQRT(-1)/NN(2)),   */
+/*     ETC. AND I1 AND J1 RUN FROM 1 TO NN(1), I2 AND J2 RUN FROM 1 TO     */
+/*     NN(2), ETC.  THERE IS NO LIMIT ON THE DIMENSIONALITY (NUMBER OF     */
+/*     SUBSCRIPTS) OF THE ARRAY OF DATA.  THE PROGRAM WILL PERFORM         */
+/*     A THREE-DIMENSIONAL FOURIER TRANSFORM AS EASILY AS A ONE-DIMEN-     */
+/*     SIONAL ONE, THO IN A PROPORTIONATELY GREATER TIME.  AN INVERSE      */
+/*     TRANSFORM CAN BE PERFORMED, IN WHICH THE SIGN IN THE EXPONENTIALS   */
+/*     IS +, INSTEAD OF -.  IF AN INVERSE TRANSFORM IS PERFORMED UPON      */
+/*     AN ARRAY OF TRANSFORMED DATA, THE ORIGINAL DATA WILL REAPPEAR,      */
+/*     MULTIPLIED BY NN(1)*NN(2)*...  THE ARRAY OF INPUT DATA MAY BE       */
+/*     REAL OR COMPLEX, AT THE PROGRAMMERS OPTION, WITH A SAVING OF        */
+/*     ABOUT THIRTY PER CENT IN RUNNING TIME FOR REAL OVER COMPLEX.        */
+/*     (FOR FASTEST TRANSFORM OF REAL DATA, NN(1) SHOULD BE EVEN.)         */
+/*     THE TRANSFORM VALUES ARE ALWAYS COMPLEX, AND ARE RETURNED IN THE    */
+/*     ORIGINAL ARRAY OF DATA, REPLACING THE INPUT DATA.  THE LENGTH       */
+/*     OF EACH DIMENSION OF THE DATA ARRAY MAY BE ANY INTEGER.  THE        */
+/*     PROGRAM RUNS FASTER ON COMPOSITE INTEGERS THAN ON PRIMES, AND IS    */
+/*     PARTICULARLY FAST ON NUMBERS RICH IN FACTORS OF TWO.                */
+/*     TIMING IS IN FACT GIVEN BY THE FOLLOWING FORMULA.  LET NTOT BE THE  */
+/*     TOTAL NUMBER OF POINTS (REAL OR COMPLEX) IN THE DATA ARRAY, THAT    */
+/*     IS, NTOT=NN(1)*NN(2)*...  DECOMPOSE NTOT INTO ITS PRIME FACTORS,    */
+/*     SUCH AS 2**K2 * 3**K3 * 5**K5 * ...  LET SUM2 BE THE SUM OF ALL     */
+/*     THE FACTORS OF TWO IN NTOT, THAT IS, SUM2 = 2*K2.  LET SUMF BE      */
+/*     THE SUM OF ALL OTHER FACTORS OF NTOT, THAT IS, SUMF = 3*K3+5*K5+..  */
+/*     THE TIME TAKEN BY A MULTIDIMENSIONAL TRANSFORM ON THESE NTOT DATA   */
+/*     IS T = T0 + T1*NTOT + T2*NTOT*SUM2 + T3*NTOT*SUMF.  FOR THE PAR-    */
+/*     TICULAR IMPLEMENTATION FORTRAN 32 ON THE CDC 3300 (FLOATING POINT   */
+/*     ADD TIME = SIX MICROSECONDS),                                       */
+/*     T = 3000 + 600*NTOT + 50*NTOT*SUM2 + 175*NTOT*SUMF MICROSECONDS     */
+/*     ON COMPLEX DATA.                                                    */
+/*     IMPLEMENTATION OF THE DEFINITION BY SUMMATION WILL RUN IN A TIME    */
+/*     PROPORTIONAL TO NTOT**2.  FOR HIGHLY COMPOSITE NTOT, THE SAVINGS    */
+/*     OFFERED BY COOLEY-TUKEY CAN BE DRAMATIC.  A MATRIX 100 BY 100 WILL  */
+/*     BE TRANSFORMED IN TIME PROPORTIONAL TO 10000*(2+2+2+2+5+5+5+5) =    */
+/*     280,000 (ASSUMING T2 AND T3 TO BE ROUGHLY COMPARABLE) VERSUS        */
+/*     10000**2 = 100,000,000 FOR THE STRAIGHTFORWARD TECHNIQUE.           */
+/*     THE COOLEY-TUKEY ALGORITHM PLACES TWO RESTRICTIONS UPON THE         */
+/*     NATURE OF THE DATA BEYOND THE USUAL RESTRICTION THAT                */
+/*     THE DATA FROM ONE CYCLE OF A PERIODIC FUNCTION.  THEY ARE--         */
+/*     1.  THE NUMBER OF INPUT DATA AND THE NUMBER OF TRANSFORM VALUES     */
+/*     MUST BE THE SAME.                                                   */
+/*     2. CONSIDERING THE DATA TO BE IN THE TIME DOMAIN,                   */
+/*     THEY MUST BE EQUI-SPACED AT INTERVALS OF DT.  FURTHER, THE TRANS-   */
+/*     FORM VALUES, CONSIDERED TO BE IN FREQUENCY SPACE, WILL BE EQUI-     */
+/*     SPACED FROM 0 TO 2*PI*(NN(I)-1)/(NN(I)*DT) AT INTERVALS OF          */
+/*     2*PI/(NN(I)*DT) FOR EACH DIMENSION OF LENGTH NN(I).  OF COURSE,     */
+/*     DT NEED NOT BE THE SAME FOR EVERY DIMENSION.                        */
+
+/*     THE CALLING SEQUENCE IS--                                           */
+/*     CALL FOURT(DATAR,DATAI,NN,NDIM,IFRWD,ICPLX,WORKR,WORKI)             */
+
+/*     DATAR AND DATAI ARE THE ARRAYS USED TO HOLD THE REAL AND IMAGINARY  */
+/*     PARTS OF THE INPUT DATA ON INPUT AND THE TRANSFORM VALUES ON        */
+/*     OUTPUT.  THEY ARE FLOATING POINT ARRAYS, MULTIDIMENSIONAL WITH      */
+/*     IDENTICAL DIMENSIONALITY AND EXTENT.  THE EXTENT OF EACH DIMENSION  */
+/*     IS GIVEN IN THE INTEGER ARRAY NN, OF LENGTH NDIM.  THAT IS,         */
+/*     NDIM IS THE DIMENSIONALITY OF THE ARRAYS DATAR AND DATAI.           */
+/*     IFRWD IS AN INTEGER USED TO INDICATE THE DIRECTION OF THE FOURIER   */
+/*     TRANSFORM.  IT IS NON-ZERO TO INDICATE A FORWARD TRANSFORM          */
+/*     (EXPONENTIAL SIGN IS -) AND ZERO TO INDICATE AN INVERSE TRANSFORM   */
+/*     (SIGN IS +).  ICPLX IS AN INTEGER TO INDICATE WHETHER THE DATA      */
+/*     ARE REAL OR COMPLEX.  IT IS NON-ZERO FOR COMPLEX, ZERO FOR REAL.    */
+/*     IF IT IS ZERO (REAL) THE CONTENTS OF ARRAY DATAI WILL BE ASSUMED    */
+/*     TO BE ZERO, AND NEED NOT BE EXPLICITLY SET TO ZERO.  AS EXPLAINED   */
+/*     ABOVE, THE TRANSFORM RESULTS ARE ALWAYS COMPLEX AND ARE STORED      */
+/*     IN DATAR AND DATAI ON RETURN.  WORKR AND WORKI ARE ARRAYS USED      */
+/*     FOR WORKING STORAGE.  THEY ARE NOT NECESSARY IF ALL THE DIMENSIONS  */
+/*     OF THE DATA ARE POWERS OF TWO.  IN THIS CASE, THE ARRAYS MAY BE     */
+/*     REPLACED BY THE NUMBER 0 IN THE CALLING SEQUENCE.  THUS, USE OF     */
+/*     POWERS OF TWO CAN FREE A GOOD DEAL OF STORAGE.  IF ANY DIMENSION    */
+/*     IS NOT A POWER OF TWO, THESE ARRAYS MUST BE SUPPLIED.  THEY ARE     */
+/*     FLOATING POINT, ONE DIMENSIONAL OF LENGTH EQUAL TO THE LARGEST      */
+/*     ARRAY DIMENSION, THAT IS, TO THE LARGEST VALUE OF NN(I).            */
+/*     WORKR AND WORKI, IF SUPPLIED, MUST NOT BE THE SAME ARRAYS AS DATAR  */
+/*     OR DATAI.  ALL SUBSCRIPTS OF ALL ARRAYS BEGIN AT 1.                 */
+
+/*     THERE ARE NO ERROR MESSAGES OR ERROR HALTS IN THIS PROGRAM.  THE    */
+/*     PROGRAM RETURNS IMMEDIATELY IF NDIM OR ANY NN(I) IS LESS THAN ONE.  */
+
+/*     PROGRAM MODIFIED FROM A SUBROUTINE OF BRENNER                       */
+/*     10-06-2000, MLR                                                     */
+
+
+void fourt(double *datar,double *datai, int nn[3], int ndim, int ifrwd, int icplx, double *workr,double *worki)
+{
+  int ifact[21],ntot,idim,np1,n,np2,m,ntwo,iff,idiv,iquot,irem,inon2,non2p,np0,nprev,icase,ifmin,i,j,jmax,np2hf,i2,i1max,i3,j3,i1,ifp1,ifp2,i2max,i1rng,istep,imin,imax,mmax,mmin,mstep,j1,j2max,j2,jmin,j3max,nhalf;
+  double theta,wstpr,wstpi,wminr,wmini,wr,wi,wtemp,thetm,wmstr,wmsti,twowr,sr,si,oldsr,oldsi,stmpr,stmpi,tempr,tempi,difi,difr,sumr,sumi,TWOPI = 6.283185307179586476925286766559;
+
+    ntot = 1;
+    for (idim = 0; idim < ndim; idim++) {
+      ntot *= nn[idim];
+    }
+
+    /*main loop for each dimension*/
+    np1 = 1;
+    for (idim = 1; idim <= ndim; idim++) {
+      n = nn[idim-1];
+      np2 = np1*n;
+
+      if (n < 1) {
+	goto L920;
+      } else if (n == 1) {
+	goto L900;
+      } 
+
+      /*is n a power of 2 and if not, what are its factors*/
+      m = n;
+      ntwo = np1;
+      iff = 1;
+      idiv = 2;
+
+    L10:
+      iquot = m/idiv;
+      irem = m-idiv*iquot;
+      if (iquot < idiv) 
+	goto L50;
+      if (irem == 0) {
+	ntwo *= 2;
+	ifact[iff] = idiv;
+	iff++;
+	m= iquot;
+	goto L10;
+      } 
+      idiv = 3;
+      inon2 = iff;
+
+    L30:
+      iquot = m/idiv;
+      irem = m-idiv*iquot;
+      if (iquot < idiv) 
+	goto L60;
+      if (irem == 0) {
+	ifact[iff] = idiv;
+	iff++;
+	m = iquot;
+	goto L30;
+      }
+      
+      idiv += 2;
+      goto L30;
+      
+    L50:
+      inon2 = iff;
+      if (irem != 0) 
+	goto L60;
+      ntwo *= 2;
+      goto L70;
+      
+    L60:
+      ifact[iff] = m;
+      
+    L70:
+      non2p = np2/ntwo;
+      
+
+	/*SEPARATE FOUR CASES-- 
+	  1. COMPLEX TRANSFORM 
+	  2. REAL TRANSFORM FOR THE 2ND, 3RD, ETC. DIMENSION.  METHOD: TRANSFORM HALF THE DATA, SUPPLYING THE OTHER HALF BY CONJUGATE SYMMETRY.
+	  3. REAL TRANSFORM FOR THE 1ST DIMENSION, N ODD.  METHOD: SET THE IMAGINARY PARTS TO ZERO.
+	  4. REAL TRANSFORM FOR THE 1ST DIMENSION, N EVEN.  METHOD: TRANSFORM A COMPLEX ARRAY OF LENGTH N/2 WHOSE REAL PARTS ARE THE EVEN NUMBERED REAL VALUES AND WHOSE IMAGINARY PARTS ARE THE ODD-NUMBERED REAL VALUES.  UNSCRAMBLE AND SUPPLY THE SECOND HALF BY CONJUGATE SYMMETRY. */
+	
+      icase = 1;
+      ifmin = 1;
+      if (icplx != 0) 
+	goto L100;
+      icase = 2;
+      if (idim > 1) 
+	goto L100;
+      icase = 3;
+      if (ntwo <= np1) 
+	goto L100;
+      icase = 4;
+      ifmin = 2;
+      ntwo /= 2;
+      n /= 2;
+      np2 /= 2;
+      ntot /= 2;
+      i = 1;
+      for (j = 1; j <= ntot; j++) {
+	datar[j] = datar[i];
+	datai[j] = datar[i+1];
+	i += 2;
+      }
+
+	/*shuffle data by bit reversal, since n = 2^k. As the shuffling can be done by simple interchange, no working array is needed*/
+    L100:
+      if (non2p > 1) 
+	goto L200;
+      np2hf = np2/2;
+      j = 1;
+      for (i2 = 1; i2 <= np2; i2 += np1) {
+	if (j >= i2) 
+	  goto L130;
+	i1max = i2+np1-1;
+	for (i1 = i2; i1 <= i1max; i1++) {
+	  for (i3 = i1; i3 <= ntot; i3 += np2) {
+	    j3 = j+i3-i2;
+	    tempr = datar[i3];
+	    tempi = datai[i3];
+	    datar[i3] = datar[j3];
+	    datai[i3] = datai[j3];
+	    datar[j3] = tempr;
+	    datai[j3] = tempi;
+	  }
+	}
+	
+      L130:
+	m = np2hf;
+	
+      L140:
+	if (j <= m) {
+	  j += m;
+	} else {
+	  j -= m;
+	  m /= 2;
+	  if (m >= np1) 
+	    goto L140;
+	}
+	
+      }
+      goto L300;
+
+	/*shuffle data by digit reversal for general n*/
+    L200:
+      for (i1 = 1; i1 <= np1; i1++) {
+	for (i3 = i1; i3 <= ntot; i3 += np2) {
+	  j = i3;
+	  for (i = 1; i <= n; i++) {
+	    if (icase != 3) {
+	      workr[i] = datar[j];
+	      worki[i] = datai[j];
+	    } else {
+	      workr[i] = datar[j];
+	      worki[i] = 0.;
+	    }
+	    ifp2 = np2;
+	    iff = ifmin;
+	  L250:
+	    ifp1 = ifp2/ifact[iff];
+	    j += ifp1;
+	    if (j >= i3+ifp2) { 
+	      j -= ifp2;
+	      ifp2 = ifp1;
+	      iff += 1;
+	      if (ifp2 > np1) 
+		goto L250;
+	    }
+	  }
+	  i2max = i3+np2-np1;
+	  i = 1;
+	  for (i2 = i3; i2 <= i2max; i2 += np1) {
+	    datar[i2] = workr[i];
+	    datai[i2] = worki[i];
+	    i++;
+	  }
+	  
+	}
+      }
+      
+      /*special case-- W=1*/
+    L300:
+      i1rng = np1;
+      if (icase == 2) 
+	i1rng = np0*(1+nprev/2);
+      if (ntwo <= np1) 
+	goto L600;
+      for (i1 = 1; i1 <= i1rng; i1++) {
+	imin = np1+i1;
+	istep = 2*np1;
+	goto L330;
+	
+      L310:
+	j = i1;
+	for (i = imin; i <= ntot; i += istep) {
+	  tempr = datar[i];
+	  tempi = datai[i];
+	  datar[i] = datar[j]-tempr;
+	  datai[i] = datai[j]-tempi;
+	  datar[j] = datar[j]+tempr;
+	  datai[j] = datai[j]+tempi;
+	  j += istep;
+	}
+	imin = 2*imin-i1;
+	istep *= 2;
+	
+      L330:
+	if (istep <= ntwo) 
+	  goto L310;
+	
+	/*special case-- W = -sqrt(-1)*/
+	imin = 3*np1+i1;
+	istep = 4*np1;
+	goto L420;
+	
+      L400:
+	j = imin-istep/2;
+	for (i = imin; i <= ntot; i += istep) {
+	  if (ifrwd != 0) {
+	    tempr = datai[i];
+	    tempi = -datar[i];
+	  } else {
+	    tempr = -datai[i];
+	    tempi = datar[i];
+	  }
+	  datar[i] = datar[j]-tempr;
+	  datai[i] = datai[j]-tempi;
+	  datar[j] += tempr;
+	  datai[j] += tempi;
+	  j += istep;
+	}
+	
+	imin = 2*imin-i1;
+	istep *= 2;
+	
+      L420:
+	if (istep <= ntwo) 
+	  goto L400;
+      }
+      
+      /*main loop for factors of 2. W=EXP(-2*PI*SQRT(-1)*m/mmax) */
+      theta = -TWOPI/8.;
+      wstpr = 0.;
+      wstpi = -1.;
+      if (ifrwd == 0) {
+	theta = -theta;
+	wstpi = 1.;
+      }
+      mmax = 8*np1;
+      goto L540;
+      
+    L500:
+      wminr = cos(theta);
+      wmini = sin(theta);
+      wr = wminr;
+      wi = wmini;
+      mmin = mmax/2+np1;
+      mstep = np1*2;
+      for (m = mmin; m <= mmax; m += mstep) {
+	for (i1 = 1; i1 <= i1rng; i1++) {
+	  istep = mmax;
+	  imin = m+i1;
+	L510:
+	  j = imin-istep/2;
+	  for (i = imin; i <= ntot; i += istep) {
+	    tempr = datar[i]*wr-datai[i]*wi;
+	    tempi = datar[i]*wi+datai[i]*wr;
+	    datar[i] = datar[j]-tempr;
+	    datai[i] = datai[j]-tempi;
+	    datar[j] += tempr;
+	    datai[j] += tempi;
+	    j += istep;
+	  }
+	  imin = 2*imin-i1;
+	  istep *= 2;
+	  if (istep <= ntwo) 
+	    goto L510;
+	}
+	wtemp = wr*wstpi;
+	wr = wr*wstpr-wi*wstpi;
+	wi = wi*wstpr+wtemp;
+      }
+      wstpr = wminr;
+      wstpi = wmini;
+      theta /= 2.;
+      mmax += mmax;
+    L540:
+      if (mmax <= ntwo) 
+	goto L500;
+      
+      /*main loop for factors not equal to 2-- W=EXP(-2*PI*SQRT(-1)*(j2-i3)/ifp2)*/
+    L600:
+      if (non2p <= 1) 
+	goto L700;
+      ifp1 = ntwo;
+      iff = inon2;
+    L610:
+      ifp2 = ifact[iff]*ifp1;
+      theta = -TWOPI/ (double)ifact[iff]; 
+      if (ifrwd == 0) 
+	theta = -theta;
+      thetm = theta/ (double)(ifp1/np1);
+      wstpr = cos(theta);
+      wstpi = sin(theta);
+      wmstr = cos(thetm);
+      wmsti = sin(thetm);
+      wminr = 1.;
+      wmini = 0.;
+      
+      for (j1 = 1; j1 <= ifp1; j1 += np1) {
+	i1max = j1+i1rng-1;
+	for (i1 = j1; i1 <= i1max; i1++) {
+	  for (i3 = i1; i3 <= ntot; i3 += np2) {
+	    i = 1;
+	    wr = wminr;
+	    wi = wmini;
+	    j2max = i3+ifp2-ifp1;
+	    for (j2 = i3; j2 <= j2max; j2 += ifp1) {
+	      twowr = 2.*wr;
+	      jmin = i3;
+	      j3max = j2+np2-ifp2;
+	      for (j3 = j2 ; j3 <= j3max; j3 += ifp2) {
+		j = jmin+ifp2-ifp1;
+		sr = datar[j];
+		si = datai[j];
+		oldsr = 0.;
+		oldsi = 0.;
+		j -= ifp1;
+	      L620:
+		stmpr = sr;
+		stmpi = si;
+		sr = twowr*sr-oldsr+datar[j];
+		si = twowr*si-oldsi+datai[j];
+		oldsr = stmpr;
+		oldsi = stmpi;
+		j -= ifp1;
+		if (j > jmin) 
+		  goto L620;
+		workr[i] = wr*sr-wi*si-oldsr+datar[j];
+		worki[i] = wi*sr+wr*si-oldsi+datai[j];
+		jmin += ifp2;
+		i++;
+	      }
+	      wtemp = wr*wstpi;
+	      wr = wr*wstpr-wi*wstpi;
+	      wi = wi*wstpr+wtemp;
+	    }
+	    i = 1;
+	    for (j2 = i3; j2 <= j2max; j2 += ifp1) {
+	      j3max = j2+np2-ifp2;
+	      for (j3 = j2; j3 <= j3max; j3 += ifp2) {
+		datar[j3] = workr[i];
+		datai[j3] = worki[i];
+		i++;
+	      }
+	    }
+	  }
+	}
+	wtemp = wminr*wmsti;
+	wminr = wminr*wmstr-wmini*wmsti;
+	wmini = wmini*wmstr+wtemp;
+      }
+      iff++;
+      ifp1 = ifp2;
+      if (ifp1 < np2) 
+	goto L610;
+      
+      /*complete a real transform in the 1st dimension, n even, by conjugate symmetries*/
+    L700:
+      switch (icase) {
+      case 1:  
+	goto L900;
+	break;
+      case 2:  
+	goto L800;
+	break;
+      case 3:  
+	goto L900;
+	break;
+      }
+
+      nhalf = n;
+      n += n;
+      theta = -TWOPI/ (double) n;
+      if (ifrwd == 0) 
+	theta = -theta;
+      wstpr = cos(theta);
+      wstpi = sin(theta);
+      wr = wstpr;
+      wi = wstpi;
+      imin = 2;
+      jmin = nhalf;
+      goto L725;
+    L710:
+      j = jmin;
+      for (i = imin; i <= ntot; i += np2) {
+	sumr = (datar[i]+datar[j])/2.;
+	sumi = (datai[i]+datai[j])/2.;
+	difr = (datar[i]-datar[j])/2.;
+	difi = (datai[i]-datai[j])/2.;
+	tempr = wr*sumi+wi*difr;
+	tempi = wi*sumi-wr*difr;
+	datar[i] = sumr+tempr;
+	datai[i] = difi+tempi;
+	datar[j] = sumr-tempr;
+	datai[j] = tempi-difi;
+	j += np2;
+      }
+      imin++;
+      jmin--;
+      wtemp = wr*wstpi;
+      wr = wr*wstpr-wi*wstpi;
+      wi = wi*wstpr+wtemp;
+    L725:
+      if (imin < jmin) {
+	goto L710;
+      } else if (imin > jmin) {
+	goto L740;
+      }
+      if (ifrwd == 0) 
+	goto L740;
+      for (i = imin; i <= ntot; i += np2) {
+	datai[i] = -datai[i];
+      }
+    L740:
+      np2 *= 2;
+      ntot *= 2;
+      j = ntot+1;
+      imax = ntot/2+1;
+    L745:
+      imin = imax-nhalf;
+      i = imin;
+      goto L755;
+    L750:
+      datar[j] = datar[i];
+      datai[j] = -datai[i];
+    L755:
+      i++;
+      j--;
+      if (i < imax) 
+	goto L750;
+      datar[j] = datar[imin]-datai[imin];
+      datai[j] = 0.;
+      if (i >= j) {
+	goto L780;
+      } else {
+	goto L770;
+      }
+    L765:
+      datar[j] = datar[i];
+      datai[j] = datai[i];
+    L770:
+      i--;
+      j--;
+      if (i > imin) 
+	goto L765;
+      datar[j] = datar[imin]+datai[imin];
+      datai[j] = 0.;
+      imax = imin;
+      goto L745;
+    L780:
+      datar[1] += datai[1];
+      datai[1] = 0.;
+      goto L900;
+      
+      /*complete a real transform for the 2nd, 3rd, ... dimension by conjugate symmetries*/
+    L800:
+      if (nprev <= 2) 
+	goto L900;
+      for (i3 = 1; i3 <= ntot; i3 += np2) {
+	i2max = i3+np2-np1;
+	for (i2 = i3; i2 <= i2max; i2 += np1) {
+	  imax = i2+np1-1;
+	  imin = i2+i1rng;
+	  jmax = 2*i3+np1-imin;
+	  if (i2 > i3) 
+	    jmax += np2;
+	  if (idim > 2) {
+	    j = jmax+np0;
+	    for (i = imin; i <= imax; i++) {
+	      datar[i] = datar[j];
+	      datai[i] = -datai[j];
+	      j--;
+	    }
+	  }
+	  j = jmax;
+	  for (i = imin; i <= imax; i += np0) {
+	    datar[i] = datar[j];
+	    datai[i] = -datai[j];
+	    j -= np0;
+	  }
+	}
+      }
+
+      /*end of loop on each dimension*/
+    L900:
+      np0 = np1;
+      np1 = np2;
+      nprev = n;
+    }
+ L920:
+    return;
+}

fftma_module/gen/LIBFFTMA/gammf.c

@@ -0,0 +1,16 @@
+#include <stdio.h>
+#include <math.h>
+#include "genlib.h"
+
+
+/*gamma covariance function*/
+double gammf(double h, double alpha)
+{
+  float delta;
+  double z;
+
+  delta = pow(20.,1./alpha)-1.;
+  z = 1./(double)(pow(1.+h*delta,alpha));
+  return(z);
+}
+

fftma_module/gen/LIBFFTMA/gasdev.c

@@ -0,0 +1,31 @@
+#include <math.h>
+#include "genlib.h"
+
+#define NTAB 32
+
+double gasdev(long *idum,long *idum2, long *iy, long iv[NTAB])
+/*returns a normally distributed deviate with 0 mean*/
+/*and unit variance, using ran2(idum) as the source */
+/*of uniform deviates                               */
+{
+  double ran2(long *idum,long *idum2, long *iy, long iv[NTAB]);
+  static int iset = 0;
+  static double gset;
+  double fac,rsq,v1,v2;
+
+    if (iset == 0) {
+    do {
+      v1 = 2.0*ran2(idum,idum2,iy,iv)-1.0;
+      v2 = 2.0*ran2(idum,idum2,iy,iv)-1.0;
+      rsq = v1*v1+v2*v2;
+    } while (rsq >= 1.0 || rsq == 0.0);
+
+    fac = sqrt(-2.0*log(rsq)/rsq);
+    gset = v1*fac;
+    iset = 1;
+    return (v2*fac);
+  } else {
+    iset = 0;
+    return (gset);
+  }
+}

fftma_module/gen/LIBFFTMA/gaussian.c

@@ -0,0 +1,10 @@
+#include <stdio.h>
+#include <math.h>
+#include "genlib.h"
+
+
+/*gaussian covariance function*/
+double gaussian(double h)
+{
+  return (exp(-3.*(double)(h*h)));
+}

fftma_module/gen/LIBFFTMA/generate.c

@@ -0,0 +1,43 @@
+#include <stdlib.h>
+#include <math.h>
+#include "geostat.h"
+
+
+/* GENERATION OF A GAUSSIAN WHITE NOISE VECTOR    */
+/*input:                                          */
+/* seed: seed                                     */
+/* n: number of components in the vector          */
+/*output:                                         */ 
+/* realization: structure defining the realization*/
+
+void generate(long *seed, int n, struct realization_mod *realization)
+{
+  int i;
+  long idum2 = 123456789,iy = 0;
+  long *iv;
+  int iset =0;
+
+  iv = (long *) malloc(NTAB * sizeof(long));
+
+  /*negative seed*/ 
+  if (*seed > 0.0)  
+    *seed = -(*seed);
+
+  /*realization definition*/
+  (*realization).n = n;
+  (*realization).code = 0;
+  (*realization).vector = (double *) malloc(n * sizeof(double));
+  if ((*realization).vector == NULL) {
+     printf("No memory available in generate");
+     exit;
+  }
+
+  /*Gaussian white noise generation*/
+  for (i=0; i < n; i++) 
+    (*realization).vector[i] = gasdev(seed,&idum2,&iy,iv,&iset);
+
+  return;
+}
+
+
+

fftma_module/gen/LIBFFTMA/geostat.h

@@ -0,0 +1,689 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdarg.h>
+
+
+#ifndef _GEOSTAT_H
+#define _GEOSTAT_H
+
+#define NTAB 32
+
+/* Modified january, the 22th 2004 */
+/* from float to double */
+
+/* List of structures: */
+/* ------------------- */
+
+/* vario_mod */
+/* variotable_mod*/
+/* grid_mod */
+/* welldata_mod */
+/* statfacies_mod */
+/* inequalities_mod */
+/* statistic_mod */
+/* grad_mod */
+/* gradients_mod */
+/* cdf_mod */
+/* realization_mod */
+
+
+/* List of functions: */
+/* ------------------ */
+
+/* axes, cardsin, choldc, coordinates           */
+/* covariance, cov_matrix, cov_value,           */
+/* cubic, cutspectr, deflimit, dual_kri         */
+/* exponential, fourt, funtrun1, G, gammf       */
+/* gammln, gammp, gasdev, gaussian, gcf,        */
+/* gen_cov_matrix, Ginv, gradual, cgrid,        */ 
+/* gser, invtrun1, krig_stat, length,           */
+/* LtimeZ, mat_vec, maxfactor, metrop, norm     */
+/* normal, nugget, power, ran2, scal_vect,      */
+/* solve3, sort, spherical, stable, statlog2nor */
+/* test_fract, trun1, trungasdev,vec_vec,       */
+/* vf2gthres,polint    */
+
+
+
+
+/*STRUCTURES*/
+/*----------*/
+/*variogram                                            */
+/*Nvario: number of combined variogram models          */
+/*vario: model of variogram per variogram model        */
+/*       1 --> exponential                             */
+/*       2 --> gaussian                                */
+/*       3 --> spherical                               */
+/*       4 --> cardsin                                 */
+/*       5 --> stable                                  */
+/*       6 --> gamma                                   */
+/*       7 --> cubic                                   */
+/*       8 --> nugget                                  */
+/*       9 --> power                                   */
+/*alpha: exponent for the stable and gamma variogram   */
+/*       per variogram model                           */
+/*ap: anisotropy axes per variogram model              */
+/*scf: correlation lengths per variogram model         */
+/*var: normalized variance per variogram model(sum = 1)*/
+struct vario_mod {
+  int Nvario;
+  int *vario;
+  double *alpha;
+  double *ap;
+  double *scf;
+  double *var;
+};
+
+
+
+/*variogram table                                      */
+/*Nvario: number of combined variogram models          */
+/*vario: model of variogram per variogram model        */
+/*       1 --> exponential                             */
+/*       2 --> gaussian                                */
+/*       3 --> spherical                               */
+/*       4 --> cardsin                                 */
+/*       5 --> stable                                  */
+/*       6 --> gamma                                   */
+/*       7 --> cubic                                   */
+/*       8 --> nugget                                  */
+/*       9 --> power                                   */
+/*alpha: exponent for the stable and gamma variogram   */
+/*       per variogram model                           */
+/*ap: anisotropy axes per variogram model              */
+/*scf: correlation lengths per variogram model         */
+/*var: normalized variance per variogram model(sum = 1)*/
+struct variotable_mod {
+  int number_of_variograms;
+  int *Nvario;
+  int *vario;
+  float *alpha;
+  float *ap;
+  float *scf;
+  float *var;
+};
+
+
+
+
+/*grid                                     */
+/*NX: number of gridblocks along the X axis*/
+/*NY: number of gridblocks along the Y axis*/
+/*NZ: number of gridblocks along the Z axis*/
+/*DX: gridblock length along the X axis    */
+/*DY: gridblock length along the Y axis    */
+/*DZ: gridblock length along the Z axis    */
+/*Xo: X-cell number of the origin cell     */
+/*Yo: Y-cell number of the origin cell     */
+/*Zo: Z-cell number of the origin cell     */
+struct grid_mod {
+  int NX, NY, NZ;
+  double DX,DY,DZ;
+  double Xo,Yo,Zo;
+};
+
+
+/*well data                                               */
+/*nwell: number of wells                                  */
+/*n: number of measurement points per well                */
+/*   i = [0...nwell-1]                                    */
+/*ntype: number of measurement types                      */
+/*code: status of the measurements i=[0...ntype-1]        */
+/*      --> 0 : Gaussian white noise                      */
+/*      --> 1: standard Normal                            */
+/*      --> 2: non standard Normal                        */
+/*      --> 3: lognormal (neperien)                       */
+/*      --> 4: lognormal (log10)                          */
+/*      --> 5: facies                                     */
+/*      --> 6: uniform                                    */
+/*      --> 7: any                                        */
+/*x: X-coordinates of the measurements                    */
+/*   i = [0 ... n[0]-1 n[0] ... n[0]+n[1]-1...sum(n[k])-1]*/
+/*y: Y-coordinates of the measurements                    */
+/*   i = [0 ... n[0]-1 n[0] ... n[0]+n[1]-1...sum(n[k])-1]*/
+/*z: Z-coordinates of the measurements                    */
+/*   i = [0 ... n[0]-1 n[0] ... n[0]+n[1]-1...sum(n[k])-1]*/
+/*measure: values of the measurements                     */
+/*   same kind of indexation, but repeated per type of    */
+/*   measurement                                          */
+/*   type 1 :                                             */
+/*   i = [0 ... n[0]-1 n[0] ... n[0]+n[1]-1...sum(n[k])-1]*/
+/*   type 2 :                                             */
+/*   i=[sum(n[k])... sum(n[k])+n[0]-1 ... 2*(sum(n[k])-1)]*/
+
+struct welldata_mod {
+  int nwell;
+  int *n;
+  int ntype;
+  int *code;
+  float *x;
+  float *y;
+  float *z;
+  float *measure;
+};
+
+
+
+/*volume fractions for facies                     */
+/*ncat: number of facies                          */
+/*nblock: number of gridblocks with different     */
+/*        volume fractions                        */
+/*        = 1 --> stationary case                 */
+/*        = NX*NY*NZ --> nonstationary case       */
+/*vf: volume fractions for the first ncat-1 facies*/
+/*    i = [0...ncat-2]*nblock                     */
+struct statfacies_mod {
+  int ncat;
+  int nblock;
+  float *vf;
+};
+
+
+/*inequalities for truncated plurigaussian realizations*/
+/*only two basic realizations Y1 and Y2 are considered */
+/*Y1 and Y2 are independent                            */
+/*nsY1: number of unknown thresholds for Y1            */
+/*nsY2: number of unknown thresholds for Y2            */
+/*thresholds: vector with the thresholds and -10 and 10*/
+/*          the output values are the Gaussian         */
+/*          thresholds                                 */
+/*          i = [0 ... n+1], n = nsY1+nsY2             */
+/*          thresholds[n] = -10,thresholds[n+1] = 10   */
+/*          given at the beginning                     */
+/*address_sY1: successive upper and lower bounds for   */
+/*             the different facies for Y1             */
+/*             i = [0 ... 2*ncat-1]                    */
+/*             the values in address_sY1 are integers  */
+/*             ranging from 0 to n+1 with n = nsY1+nsY2*/
+/*address_sY2: successive upper and lower bounds for   */
+/*             the different facies for Y2             */
+/*             i = [0 ... 2*ncat-1]                    */
+/*             the values in address_sY2 are integers  */
+/*             ranging from 0 to n+1 with n = nsY1+nsY2*/
+struct inequalities_mod {
+  int nsY1;
+  int nsY2;
+  float *thresholds;
+  int *address_sY1;
+  int *address_sY2;
+};
+
+
+/*statistical data                                       */
+/*type --> 0 : normal                                    */
+/*     --> 1 : natural log                               */
+/*     --> 2 : log 10                                    */
+/*nblock_mean: number of gridblocks with different       */
+/*        means                                          */
+/*        = 1 --> stationary case                        */
+/*        = NX*NY*NZ --> nonstationary case              */
+/*mean: mean of the variable i = [0...nblock_mean]       */
+/* DHF CHANGE: FOR TYPE 1 AND TYPE 2, MEAN IS LOG MEAN ! */
+/*nblock_var: number of gridblocks with different        */
+/*        variances                                      */
+/*        = 1 --> stationary case                        */
+/*        = NX*NY*NZ --> nonstationary case              */
+/*variance: variance of the variable i = [0...nblock_var]*/
+/* DHF CHANGE: FOR TYPE 1 AND TYPE 2, VAR IS LOG VAR   ! */
+struct statistic_mod {
+  int type;
+  int nblock_mean;
+  double *mean;
+  int nblock_var;
+  double *variance;
+};
+
+
+/*gradual deformation parameters                      */
+/*Nadded: number of complementary realizations        */
+/*NZONES: number of subregions                        */
+/*rho: gradual deformation parameters                 */
+/*rho[NZONES*(0...Nadded)]                            */
+/*cellini[NZONES*(0...2)] lower cell bound for        */
+/*for subregions along axes X,Y,Z                     */
+/*cellfin[NZONES*(0...2)] upper cell bound for        */
+/*for subregions along axes X,Y,Z                     */
+struct grad_mod {
+  int Nadded, NZONES;
+  float *rho;
+  int *cellini, *cellfin;
+};
+
+
+/*gradient structures                                   */
+/*Nparam : number of parameters for which gradients are */
+/*         required                                     */
+/*Ncells : number of cells for which gradients are      */
+/*         calculated                                   */
+/*grad : vector with the calculated gradients           */
+/*       dimension = Nparam*Ncells                      */
+/*       this vector is organized as                    */
+/*       0 1...Ncells-1 for the first parameter followed*/
+/*       Ncells....2*Ncells-1 for the second parameter  */
+/*       and so on                                      */
+struct gradients_mod {
+  int Nparam,Ncells;
+  float *grad;
+};
+
+
+
+/*description of discretized cumulative distributions */
+/*n: number of points                                 */
+/*x: values along the x axis i = [0...n-1]            */
+/*fx: corresponding values for the cumulative         */
+/*    distribution i = [0...n-1]                      */
+struct cdf_mod {
+  int n;
+  float *x;
+  float *fx;
+};
+
+
+/*realization                                         */
+/*n: number of components                             */
+/*code: status of the realization                     */
+/*      --> 0 : Gaussian white noise                  */
+/*      --> 1: standard Normal                        */
+/*      --> 2: non standard Normal                    */
+/*      --> 3: lognormal (neperien)                   */
+/*      --> 4: lognormal (log10)                      */
+/*      --> 5: facies                                 */
+/*      --> 6: conditional standard Normal            */
+/*      --> 7: conditional non standard Normal        */
+/*      --> 8: conditional lognormal (neperien)       */
+/*      --> 9: conditional lognormal (log10)          */
+/*      --> 10: conditional facies                    */
+/*      --> 11: uniform numbers                       */
+/*      --> 12: conditional uniform numbers           */
+/*      --> 13: unconditional any type                */
+/*      --> 14: conditional any type                  */
+/*vector: realization vector i = [0...n-1]            */
+struct realization_mod {
+  int n;
+  int code;
+  double *vector;
+};
+
+/*=====================================================*/
+
+/*FUNCTIONS*/
+/*---------*/
+
+
+/*normalization of the anostropy axes                  */
+/*ap: anisotropy axes                                  */
+/*scf: correlation lengths                             */
+/* The returned normalized axes are in ap              */
+void axes(double *ap, double *scf, int N);
+
+
+/*cardsin covariance value for lag h*/
+double cardsin(double h);
+
+
+/*Cholesky decomposition of matrix C                    */
+/* C     : symetric positive-definite matrix recorded   */
+/*         (per raws) as a vector with only components  */
+/*         Cij so that j <= i, 0 <= i <= n              */
+/* n     : dimension of matrix Cij                      */
+/*                                                      */
+/* C is turned into the lower triangular cholesky matrix*/
+void choldc(double *C, int n);
+
+
+/*computes the coordinates of a given cell    */
+/*as numbers of cells along the X,Y and Z axes*/
+/*maille = i[0]+1+i[1]*NX+i[2]*NX*NY          */
+/*input:                                      */
+/*maille: number of the cell to identify      */
+/*grid: structure defining the grid           */
+/*output:                                     */
+/*i: vector with the coordinates              */
+void coordinates(int maille, int i[3],struct grid_mod grid);
+
+
+/*builds the sampled covariance function */
+/*dimensions are even                    */
+/*covar: covariance array, vector of size*/
+/*1+NX*NY*NZ, covar[0] is a dead cell    */
+/*variogram: structure defined above     */
+/*grid: structure defined above          */
+/*n: number of gridblocks along X,Y and Z*/
+void covariance(double *covar,struct vario_mod variogram, struct grid_mod grid, int n[3]);
+
+/*computation of the covariance matrix for the well data*/
+/*well coordinates are given as a number of cells       */
+/*The dimension of C is given by well.nwell             */
+/*C is recorded as a vector so that                     */
+/*C[k] = Cij with i = [0...nwell-1], j = [0...nwell-1]  */
+/*and k = j+i(i+1)/2                                    */
+/*variogram: structure defined above                    */
+/*well: structure defined above                         */
+/*grid: structure defined above                         */
+void cov_matrix(double *C, struct vario_mod variogram, struct welldata_mod well, struct grid_mod grid);
+
+
+/*calculation of the covariance value for a distance h */
+/*defined by i,j,k                                     */
+/*available variogram model:                           */
+/* 1 -> exponential                                    */
+/* 2 -> gaussian                                       */
+/* 3 -> spherical                                      */
+/* 4 -> cardsin                                        */
+/* 5 -> stable                                         */
+/* 6 -> gamma                                          */
+/* 7 -> cubic                                          */
+/* 8 -> nugget                                         */
+/* 9 -> power                                          */
+/*variogram: variogram with the structure defined above*/
+/*di: distance along the X axis                        */
+/*dj: distance along the Y axis                        */
+/*dk: distance along the Z axis                        */
+/* The returned value is the computed covariance value */
+double cov_value(struct vario_mod variogram,double di,double dj,double dk);
+
+/*cubic covariance value for lag h*/
+double cubic(double h);
+
+
+/*truncation of the power spectrum to remove     */
+/*high frequencies - isotropic case              */
+/*covar: power spectrum                          */
+/*kx: number of cells to save along the x-axis   */
+/*ky: number of cells to save along the y-axis   */
+/*kz: number of cells to save along the z-axis   */
+/*n[3]: number of cells along the X, Y and Z axes*/
+void cutspectr(float *covar, int kx, int ky, int kz, int n[3]);
+
+
+/*defines the threshold interval for a facies x*/
+/*lim_inf: lower bound                         */
+/*lim_sup: upper bound                         */
+/*x: facies                                    */
+/*thresholds: Gaussian threshold vector        */
+/*facies: structure defined above              */
+/*nblock: gridcell number of point x           */
+void deflimit(double *plim_inf, double *plim_sup, float x, float *thresholds, struct statfacies_mod facies,int nblock);
+
+
+/*kriges the realization considering weights           */
+/*realin: input realization                            */
+/*variogram: structure defining the variogram          */
+/*k: type of measure                                   */
+/*well: structure defining the well data               */
+/*grid: structure defined above                        */
+/*D: weight vector of length Ndata, Di, i = 0...Ndata-1*/
+/*The kriged realization is stored in realout          */
+void dual_kri(struct realization_mod *realin, struct vario_mod variogram,struct welldata_mod well, struct grid_mod grid, double *D,struct realization_mod *realout);
+
+
+
+/*exponential covariance value for lag h*/
+double exponential(double h);
+
+
+/*Fast Fourier Transform - Cooley-Tukey algorithm     */
+/*datar: real part vector - to be transformed         */
+/*datai: imaginary part vector - to be transformed    */
+/*nn: number of gridblocks along the X,Y and Z axes   */
+/*ndim: number of dimensions                          */
+/*ifrwd: non-zero for forward transform, 0 for inverse*/
+/*icplx: non-zero for complex data, 0 for real        */
+/*workr: utility real part vector for storage         */
+/*worki: utility imaginary part vector for storage    */
+/*The transformed data are returned in datar and datai*/
+void fourt(double *datar,double *datai, int nn[3], int ndim, int ifrwd, int icplx,double *workr,double *worki);
+
+
+/*calculates F(x) = (1/a)*exp(-x*x/2)*/
+double funtrun1(double x);
+
+
+/*cumulative standard normal value*/
+float G(float x);
+
+
+/*gamma covariance value for lag h and exponent alpha*/
+double gammf(double h, double alpha);
+
+
+/*returns the value ln(G(x))*/
+float gammln(float xx);
+
+
+/*incomplete gamma fnction*/
+float gammp(float a, float x);
+
+
+/*returns a normally distributed deviate with 0 mean*/
+/*and unit variance, using ran1(idum) as the source */
+/*of uniform deviates                               */
+/*idum: seed                                        */
+double gasdev(long *idum, long *idum2, long *iy, long *iv, int *iset);
+
+/*gaussian covariance value for lag h*/
+double gaussian(double h);
+
+
+/*incomplete gamma function evaluated by its continued */
+/*fraction represented as gammcf, also returns ln(G(a))*/ 
+/*as gln                                               */
+void gcf(float *gammcf, float a, float x, float *gln);
+
+
+/*computation of the covariance matrix for the well data*/
+/*well coordinates have no specific unit                */
+/*The dimension of C is given by n                      */
+/*C defines the correlation between the first n wells   */
+/*C is recorded as a vector so that                     */
+/*C[k] = Cij with i = [0...nwell-1], j = [0...nwell-1]  */
+/*and k = j+i(i+1)/2                                    */
+/*variogram: structure defined above                    */
+/*well: structure defined above                         */
+void gen_cov_matrix(double *C, struct vario_mod variogram, struct welldata_mod well, int n);
+
+
+/*Ginv                                                  */
+/*Computes the inverse of the standard normal cumulative*/
+/*distribution function with a numerical approximation  */ 
+/*from Statistical Computing,by W.J. Kennedy, Jr. and   */
+/*James E. Gentle, 1980, p. 95.                         */
+/*input :                                               */
+/*p: cumulative probability value                       */
+float Ginv(float p);
+
+
+/*gradual combination of 1 realization + Nadded  */
+/*complementary realizations                     */
+/*rho: gradual deformation parameters            */
+/*rho[0...NZONES*Nadded-1]                       */
+/*rangement des vecteurs colonnes les uns apres  */
+/*les autres                                     */
+/*Zo: starting realization                       */
+/*Zo[0...n]                                      */
+/*Z: complementary realizations all stored       */
+/*Z[0...n-1 n...2n-1 ...(Nadded-1)n...Nadded.n-1]*/
+/*sequentially in a single vector                */
+/*Nadded: number of complementary realizations   */
+/*n: number of components per realization        */
+/*NZONES: number of subregions                   */
+/*grid: grid definition                          */
+void gradual(struct grad_mod grad,float *Zo,float *Z,float *Zfinal,int n,struct grid_mod grid);
+
+
+/*computes the size of the underlying grid for FFTs*/
+/*input:                                           */
+/*variogram: structure defining the variogram model*/
+/*grid: structure defining the actual grid         */
+/*output:                                          */
+/*n: vector with the number of cells along the     */
+/*   X, Y and Z axes for the underlying grid       */
+/*   i = [0 1 2]                                   */
+void cgrid(struct vario_mod variogram, struct grid_mod grid, int n[3]);
+
+/*incomplete gamma function evaluated by its series*/
+/*representation as gamser, also returns ln(G(a))  */ 
+/*as gln                                           */
+void gser(float *gamser, float a, float x, float *gln);
+
+
+/*calculates x so that x = invF(u)               */
+/*F is the cumulative density function for the   */
+/*function approximating the Gaussian function   */
+/*u: uniform deviate between 0 and 1             */
+/*lim_inf: lower bound of the considered interval*/
+/*lim_sup: upper bound of the considered interval*/
+/*C: normalizing constant                        */
+double invtrun1(double u, double lim_inf, double lim_sup, double C);
+
+
+/*computes the kriging mean and variance*/
+/*for the vector bi, i = [0...n-1]      */
+void krig_stat(float *b, int n, struct vario_mod variogram, struct welldata_mod well, float *mean, float *var);
+
+
+/* computes the number of gridblocks for one dimension*/
+/*N: initial number of gridblocks                     */
+/*i: considered direction                             */
+/*scf: correlation length                             */
+/*ap: normalized anisotropy axes                      */
+int length(int N, int i, double *scf, double *ap, double D, int Nvari);
+
+/*calculates L.Z/
+/* L     : lower triangular matrix recorded            */
+/*         (per raws) as a vector with only components */
+/*         Lij so that j <= i, i = [0...n-1]           */
+/* Z     : vector, Zi avec i = [0...n-1]               */
+/* b     : vector, bi avec i = [0...n-1]               */
+/* n     : dimension of matrix Lij                     */
+/*                                                     */
+/* The solution vector is returned in b                */
+void LtimeZ(double *L, float *Z, float *b, int n);
+
+
+/*calculates C.x/
+/* C     : symmetric positive-definite matrix recorded */
+/*         (per raws) as a vector with only components */
+/*         Cij so that j <= i, i = [0...n-1]           */
+/* x     : vector, xi avec i = [0...n-1]               */
+/* b     : vector, bi avec i = [0...n-1]               */
+/* n     : dimension of matrix Cij                     */
+/*                                                     */
+/* The result vector is returned in b                  */
+void mat_vec(double *C, double *x, double *b, int n);
+
+
+/*determines the greatest prime factor of an integer*/
+int maxfactor(int n);
+
+/*metrop returns a boolean varible that issues a       */
+/*verdict on whether to accept a reconfiguration       */
+/*defined by the probability ratio "ratio".            */
+/*If ratio >= 1, metrop = 1(true), while if ratio < 1, */
+/*metrop is only true with probability "ratio"         */
+int metrop(double ratio,long *idum,long *idum2, long *iy, long *iv);
+
+
+/*2-norm of vector b                 */
+/* b : vector                        */
+/* n : length of b, bi, i = [0...n-1]*/
+/*returns the norm of b              */
+double norm(double *b,int n);
+
+
+/*value of g(x) where g is the normal function*/
+double normal(double x);
+
+
+/*nugget covariance value for lag h*/
+double nugget(double h);
+
+
+/*power covariance value for lag h and exponent alpha*/
+double power(double h,double alpha);
+
+
+/*generates uniform deviates between 0 and 1*/
+/*idum: seed                                */
+double ran2(long *idum, long *idum2, long *iy, long *iv);
+
+
+
+/*calculates bt.b                */
+/* b : vector, bi, i = [0...n-1] */
+/* n : length of b               */
+/*returns the scalar product of b*/
+double scal_vec(double *b,int n);
+
+
+/*solves the set of n linear equations Cx = D           */
+/* C     : symmetric positive-definite matrix recorded  */
+/*         (per raws) as a vector with only components  */
+/*         Cij so that j <= i, i = [0...n-1]            */
+/* D     : right-hand side vector, Di avec i = [0...n-1]*/
+/* n     : dimension of matrix Cij                      */
+/*                                                      */
+/* The solution vector is returned in D                 */
+/* CONJUGATE GRADIENT method                            */
+void solve3(double *C, double *D, int n);
+
+
+/*sorts an array [0...n-1] into ascending order using */
+/*shell                                               */ 
+void sort(float n, float *arr);
+
+
+/*spherical covariance value for lag h*/
+double spherical(double h);
+
+
+/*stable covariance value for lag h and exponent alpha*/
+double stable(double h, double alpha);
+
+
+/*conversion of log mean and variance to nor*/
+void statlog2nor(struct statistic_mod *pstat);
+
+
+/*tries factor                               */
+/*pnum: number to be decomposed              */
+/*fact: suggested factor                     */
+/*pmaxfac: memory to keep the greatest factor*/
+int test_fact(int *pnum, int fact, int *pmaxfac);
+
+
+/*calculates the integrale of an approximate function*/
+/*for the Gaussian function over an interval defined */
+/*by lim_inf and lim_sup                             */
+/*lim_inf: lower bound of the considered interval    */
+/*lim_sup: upper bound of the considered interval    */
+double trun1(double lim_inf, double lim_sup);
+
+
+/*draws a truncated gaussian variable between lim_inf*/
+/*and lim_sup                                        */
+/*idum: seed                                         */
+double trungasdev(long *idum,double lim_inf,double lim_sup,long *idum2, long *iy, long iv[NTAB]);
+
+/* tb1.b2                                    */
+/* b1 : vector                               */
+/* b2 : vector                               */
+/* n : length of b1 and b2, bi, i = [0...n-1]*/
+/*returns the norm the product tb1.b2        */
+double vec_vec(double *b1, double *b2,int n);
+
+
+/*turns the volume fractions into Gaussian thresholds  */
+/*facies: structure defined above                      */
+/*thresholds: output threshold vector fot i = [0...n-1]*/
+/*where n is the number of facies-1                    */
+/*USES normal*/
+void vf2gthres(struct statfacies_mod facies,float *thresholds);
+
+void polint(float xa[],float ya[],int n,float x, float *y,float *dy);
+
+
+
+#endif

fftma_module/gen/LIBFFTMA/length.c

@@ -0,0 +1,39 @@
+#include <math.h>
+
+/* compute the length for one dimension*/
+int length(int N, int i, double *scf, double *ap, double D, int Nvari)
+{
+  int maxfactor(int n);
+  double temp1, temp2;
+  int n, j, k, nmax;
+  int nlimit = 13;
+ 
+  if (N == 1) {
+      n = 1;
+    } else {
+      
+      for (k = 0; k < Nvari; k++) {
+	temp1 = fabs(ap[9*k+i])*scf[3*k]*scf[3*k];
+	for (j = 1; j <3; j++) {
+	  temp2 = fabs(ap[9*k+3*j+i])*scf[3*k+j]*scf[3*k+j];
+	  if (temp2 > temp1) 
+	    temp1 = temp2;
+	}
+      }
+      temp1 = sqrt(temp1);
+      temp1 /= (double)D;
+      if ((double)N/temp1 < 2.) {
+	n = N+(int)(2*temp1);
+      } else {
+	n = N+(int)temp1;
+      }
+      if ((n % 2) != 0) 
+	n = n+1;
+      nmax = maxfactor(n);
+      while (nmax > nlimit) {
+	n += 2;
+	nmax = maxfactor(n);
+      }
+    }
+  return (n);
+}

fftma_module/gen/LIBFFTMA/makefileFFTMA_debug.lib

@@ -0,0 +1,36 @@
+#
+########################################################################
+#
+#   Makefile for library
+#
+########################################################################
+#
+
+INCLUDE = -I./
+LIBS =  -lm -L./
+# CCFLAGS = -fast
+ifeq (${ARCH},sun)
+	CC = cc 
+	CCFLAGS = -g
+endif
+ifeq (${ARCH},linux)
+	CC = gcc
+	CCFLAGS = -g
+endif
+
+LIB = libFFTMA_debug_${ARCH}.a
+
+NOBJS= gammf.o FFTMA.o addstat.o axes.o cgrid.o covariance.o fourt.o length.o maxfactor.o test_fact.o cov_value.o generate.o gasdev.o ran2.o stable.o gaussian.o power.o cubic.o spherical.o nugget.o exponential.o cardsin.o nor2log.o
+
+
+.c.o: 
+	${CC} $(INCLUDE) $(CCFLAGS) -c $< 
+
+# LIBRARY
+$(LIB) : $(NOBJS) 
+	 ar cr $(LIB) $(NOBJS)
+	 ranlib $(LIB)
+
+clean : 
+	rm *.o
+

fftma_module/gen/LIBFFTMA/maxfactor.c

@@ -0,0 +1,35 @@
+#include "genlib.h"
+
+/*determines the greatest prime factor of an integer*/
+int maxfactor(int n)
+{
+  int test_fact(int *pnum, int fact, int *pmaxfac);
+  int lnum, fact;
+  int maxfac;
+
+  maxfac = 1;
+  lnum = n;
+
+  if ( lnum != 0 && lnum != 1 ) {
+    fact = 2;
+    if ( test_fact( &lnum, fact,&maxfac)) {
+      fact = 3;
+      if ( test_fact( &lnum, fact,&maxfac)) {
+	fact = 5;
+	for (;;) {
+	  if (!test_fact( &lnum, fact,&maxfac))
+	    break;
+	  fact += 2;
+	  if (!test_fact( &lnum, fact,&maxfac))
+	    break;
+	  fact += 4;
+	}
+      }
+    }
+    if ( lnum != 1 ) {
+      if (lnum > maxfac)
+	maxfac = lnum;
+    }
+  }
+  return (maxfac);
+}

fftma_module/gen/LIBFFTMA/nor2log.c

@@ -0,0 +1,78 @@
+#include <stdlib.h>
+#include <math.h>
+#include "geostat.h"
+
+
+/*TURNS NORMAL NUMBERS INTO LOGNORMAL NUMBERS   */
+/*input:                                        */
+/*realin: structure defining a realization -    */
+/*        normal numbers                        */
+/*typelog: --> 3: lognormal (natural)           */
+/*         --> 4: lognormal (log10)             */
+/*output:                                       */
+/*realout: structure defining a realization -   */
+/*         lognormal numbers                    */
+
+void nor2log(struct realization_mod *realin, int typelog, struct realization_mod *realout)
+{
+
+  int i;
+  double coeff;
+
+
+  coeff = log(10.0);
+
+
+  /*Is the output realization allocated ?*/
+  /*is its length equal to realin.n?*/
+  if ((*realout).vector == NULL || (*realout).n != (*realin).n) {
+    (*realout).vector = (double *) malloc((*realin).n * sizeof(double));
+    if ((*realout).vector == NULL) {
+      printf("No memory available");
+      return;
+    }
+  }
+  (*realout).n = (*realin).n;
+
+
+  switch ((*realin).code) {
+  case 0:
+  case 1:
+  case 2:
+    (*realout).code = typelog;
+    break;
+  case 6:
+  case 7:
+    if (typelog == 3) {
+      (*realout).code = 8;
+    } else if (typelog == 4) {
+      (*realout).code = 9;
+    }
+    break;
+  default:
+    printf("Input is not normal in nor2log");
+    return;
+    break;
+  }
+
+
+  /*anamorphose*/
+  for (i = 0; i < (*realin).n; i++) {
+    switch (typelog) {
+    case 3:
+      /*natural logarithm*/
+      (*realout).vector[i] = exp((*realin).vector[i]);
+      break;
+    case 4:
+      /*log10*/
+      (*realout).vector[i] = exp((*realin).vector[i]*coeff);
+      break;
+    default:
+      printf("Unexpected case in nor2log");
+      return;
+      break;
+    }
+  }
+
+  return;
+}

fftma_module/gen/LIBFFTMA/nugget.c

@@ -0,0 +1,14 @@
+#include <stdio.h>
+#include <math.h>
+#include "genlib.h"
+
+
+/*nugget covariance function*/
+double nugget(double h)
+{
+  if (h == 0) {
+    return (1.);
+  } else {
+    return(0.);
+  }
+}

fftma_module/gen/LIBFFTMA/power.c

@@ -0,0 +1,10 @@
+#include <stdio.h>
+#include <math.h>
+#include "genlib.h"
+
+
+/*power covariance function*/
+double power(double h, double alpha)
+{
+  return(pow(h,alpha));
+}

fftma_module/gen/LIBFFTMA/ran2.c

@@ -0,0 +1,50 @@
+#include "genlib.h"
+
+#define IM1 2147483563
+#define IM2 2147483399
+#define AM (1.0/IM1)
+#define IMM1 (IM1-1)
+#define IA1 40014
+#define IA2 40692
+#define IQ1 53668
+#define IQ2 52774
+#define IR1 12211
+#define IR2 3791
+#define NTAB 32
+#define NDIV (1+IMM1/NTAB)
+#define EPS 1.2e-7
+#define RNMX (1.0-EPS)
+
+double ran2(long *idum, long *idum2, long *iy, long iv[NTAB])
+
+{
+  int j;
+  long k;
+  double temp;
+
+  if (*idum <= 0) {
+    if (-(*idum) < 1) *idum = 1;
+    else *idum = -(*idum);
+    *idum2 = (*idum);
+    for (j = NTAB+7; j >= 0; j--) {
+      k = (*idum)/IQ1;
+      *idum = IA1*(*idum-k*IQ1)-k*IR1;
+      if (*idum < 0) *idum += IM1;
+      if (j < NTAB) iv[j] = *idum;
+    }
+    *iy = iv[0];
+  }
+
+  k = (*idum)/IQ1;
+  *idum = IA1*(*idum-k*IQ1)-k*IR1;
+  if (*idum < 0) *idum += IM1;
+  k = *idum2/IQ2;
+  *idum2 = IA2*(*idum2-k*IQ2)-k*IR2;
+  if (*idum2 < 0) *idum2 += IM2;
+  j = (*iy)/NDIV;
+  *iy = iv[j]-(*idum2);
+  iv[j] = *idum;
+  if (*iy < 1) (*iy) += IMM1;
+  if ((temp = AM*(*iy)) > RNMX) return (RNMX);
+  else return (temp);
+}

fftma_module/gen/LIBFFTMA/spherical.c

@@ -0,0 +1,17 @@
+#include <stdio.h>
+#include <math.h>
+#include "genlib.h"
+
+
+/*spherical covariance function*/
+double spherical(double h)
+{
+  double z;
+
+  if (h >= 1.) {
+    z = 0.;
+  } else {
+    z = 1.-1.5*(double)h+0.5*(double)(h*h*h);
+  }
+  return (z);
+}

fftma_module/gen/LIBFFTMA/stable.c

@@ -0,0 +1,10 @@
+#include <stdio.h>
+#include <math.h>
+#include "genlib.h"
+
+
+/*stable covariance function*/
+double stable(double h, double alpha)
+{
+  return(exp(-3.*(double)pow(h,alpha)));
+}

fftma_module/gen/LIBFFTMA/test_fact.c

@@ -0,0 +1,26 @@
+#include "genlib.h"
+
+/*tries factor*/
+int test_fact(int *pnum, int fact, int *pmaxfac)
+{
+  int power, t;
+  
+  power = 0;
+  while ( ( t = *pnum / fact ) * fact == *pnum ) {
+      ++power;
+      *pnum = t;
+    }
+
+  if ( power != 0 ) {
+    if (fact > *pmaxfac)
+      *pmaxfac = fact;
+  }
+
+  if ( t > fact ) {
+    return (1);
+  }  
+
+  return (0);
+}
+
+

fftma_module/gen/LIB_FFTMA2/FFTMAmemoire.c

@@ -0,0 +1,110 @@
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#include "geostat.h"
+
+
+/*FAST FOURIER TRANSFORM MOVING AVERAGE METHOD */
+/*Turns a Gaussian white noise vector into a   */
+/*spatially correlated vector                  */
+/*input:                                       */
+/*variogram: structure defining the variogram  */
+/*           model                             */
+/*grid: structure defining the grid            */
+/*n: vector with the number of cells along the */
+/*   X, Y and Z axes for the underlying grid   */
+/*   i = [0 1 2]                               */
+/*   --> 0 0 0        : n will be computed and */
+/*   updated as output                         */
+/*   --> nx ny nz: these dimensions are used   */
+/*realin: structure defining a realization -   */
+/*        must be a Gaussian white noise       */
+/*output:                                      */
+/*realout: structure defining a realization -  */
+
+void FFTMA2(struct vario_mod variogram,struct grid_mod grid,int n[3],struct realization_mod *realin,struct realization_mod *realout)
+{
+  int NTOT,i,j,k,NMAX,NDIM,ntot,nmax,NXYZ,nxyz,maille0,maille1;
+  int solver;
+  double temp;
+  double *ireal,*covar,*workr,*worki,*realization;
+  string variable;
+
+  /*covariance axis normalization*/
+  axes(variogram.ap,variogram.scf,variogram.Nvario);
+  
+  /*pseudo-grid definition*/
+  cgrid(variogram,grid,n);
+  
+  /*constant definition*/
+  NTOT = n[0]*n[1]*n[2];
+  ntot = NTOT+1;
+  NMAX = n[0];
+  NDIM = 3;
+  for (i=1;i<3;i++) {
+    if (n[i] > NMAX)
+      NMAX = n[i];
+    if (n[i] == 1)
+      NDIM--;
+  }
+  nmax = NMAX+1;
+  NXYZ = grid.NX*grid.NY*grid.NZ;
+  nxyz = NXYZ+1;
+  
+  /*array initialization*/
+  covar = (double *) malloc(ntot * sizeof(double));
+/*   testmemory(covar); */
+  allouememoire(covar,'covar');
+
+
+
+
+  ireal = (double *) malloc(ntot * sizeof(double));
+  testmemory(ireal);
+
+  realization = (double *) malloc(ntot * sizeof(double));
+  testmemory(realization);
+
+  workr = (double *) malloc(nmax * sizeof(double));
+  testmemory(workr);
+
+  worki = (double *) malloc(nmax * sizeof(double));
+  testmemory(worki);
+	
+	/*covariance function creation*/
+  covariance(covar,variogram,grid,n);
+	
+  /*power spectrum*/
+  fourt(covar,ireal,n,NDIM,1,0,workr,worki);
+	
+  /*organization of the input Gaussian white noise*/
+  solver=0;
+  prebuild_gwn(grid,n,realin,realization,solver);
+	
+  /*forward fourier transform of the GWN*/
+  fourt(realization,ireal,n,NDIM,1,0,workr,worki);
+
+  /* build realization in spectral domain   */
+  build_real(n,NTOT,covar,realization,ireal);
+	
+  free(covar);
+	
+	/*backward fourier transform*/
+  fourt(realization,ireal,n,NDIM,0,1,workr,worki);
+	
+	
+  free(ireal);
+  free(workr);
+  free(worki);
+	
+	/*output realization*/
+  clean_real(realin,n,grid,realization,realout);
+	
+  free(realization);
+	
+  return;
+}
+
+
+
+

fftma_module/gen/LIB_FFTMA2/Makefile.libFFTMA2

@@ -0,0 +1,30 @@
+
+########################################################################
+#
+#   Makefile for library
+#
+########################################################################
+
+
+INTERFACE = ../include
+
+INCLUDE = -I${INTERFACE}
+LIBS =  -lm -L../lib
+CC = cc
+ CCFLAGS = 
+
+LIB = libFFTMA2_${ARCH}.a
+
+NOBJS= kgeneration.o kgeneration2.o fftma2.o prebuild_gwn.o build_real.o addstat2.o clean_real.o
+
+.c.o: 
+	${CC} $(INCLUDE) $(CCFLAGS) -c $< 
+
+# LIBRARY
+$(LIB) : $(NOBJS) 
+	 ar cr $(LIB) $(NOBJS)
+	 ranlib $(LIB)
+
+clean : 
+	rm *.o
+

fftma_module/gen/LIB_FFTMA2/addstat2.c

@@ -0,0 +1,119 @@
+#include <stdio.h>
+#include <math.h>
+#include "genlib.h"
+#include "geostat.h"
+
+/*addstat                                                 */
+/*adds mean and variance effects to the N(0,1) realization*/
+/*input:                                                  */
+/*realin: structure defining a realization -              */
+/*        must have zeio mean and unit variance           */
+/*stat: structure defining the mean and variance          */
+/*output:                                                 */
+/*realout: structure defining a realization -             */
+
+void addstat2(struct realization_mod *realin,struct statistic_mod stat ,struct realization_mod *realout,struct realization_mod *realout2)
+
+{
+
+  int i,nblockm,nblockv;
+  double r,moy,var;
+
+  /*Is the output realization allocated ?*/
+  /*is its length equal to realin.n?*/
+  if ((*realout).vector == NULL || (*realout).n != (*realin).n) {
+    (*realout).vector = (double *) malloc((*realin).n * sizeof(double));
+    if ((*realout).vector == NULL)
+      Error("No memory available");
+  }
+  (*realout).n = (*realin).n;
+
+  if ((*realout2).vector == NULL || (*realout2).n != (*realin).n) {
+    (*realout2).vector = (double *) malloc((*realin).n * sizeof(double));
+    if ((*realout2).vector == NULL)
+      Error("No memory available");
+  }
+  (*realout2).n = (*realin).n;
+
+
+  /*test over the input realization*/
+  switch ((*realin).code) {
+  case 0:
+  case 1:
+    (*realout).code = 2;
+    (*realout2).code = 2;
+    break;
+  case 6:
+    (*realout).code = 7;
+    (*realout2).code = 7;
+    break;
+  default:
+    (*realout).code = (*realin).code;
+    (*realout2).code = (*realin).code;
+    break;
+  }
+
+  for (i = 0; i < (*realin).n; i++) {
+
+
+    /*mean*/
+    switch (stat.nblock_mean) {
+    case 1:
+      /*stationary case*/
+      nblockm = 1;
+      break;
+    default:
+      /*number of the cell - nonstationary case*/
+      nblockm = i+1;
+      break;
+    }
+
+
+    /*variance*/
+    switch (stat.nblock_var) {
+    case 1:
+      /*stationary case*/
+      nblockv = 1;
+      break;
+    default:
+      /*number of the cell - nonstationary case*/
+      nblockv = i+1;
+      break;
+    }
+
+
+ /*    switch (stat.type) { */
+/*     case 0: */
+
+      /*normal case*/
+      moy = stat.mean[nblockm-1];
+      var = stat.variance[nblockv-1];
+
+/*       break; */
+/*     case 1: */
+       /*lognormal (natural) case*/
+/*       r = (double)sqrt(stat.variance[nblockv-1])/stat.mean[nblockm-1]; */
+/*       r *= r; */
+/*       moy = (double)log(stat.mean[nblockm-1]/sqrt(1.0+r)); */
+/*       var = (double)log(1.0+r); */
+/*       break; */
+/*     case 2: */
+       /*lognormal (log10) case*/ 
+/*       r = (double)sqrt(stat.variance[nblockv-1])/stat.mean[nblockm-1]; */
+/*       r *= r; */
+/*       moy = (double)log10(stat.mean[nblockm-1]/sqrt(1.0+r)); */
+/*       var = (double)log10(1.0+r); */
+/*       break; */
+/*     default:   */
+/*       Error("Type not defined in addstat"); */
+/*       break; */
+/*     } */
+
+ 
+
+    (*realout).vector[i] = (double)sqrt(var)*(*realin).vector[i];
+    (*realout2).vector[i] = (double)sqrt(var)*(*realin).vector[i]+moy;
+  }
+
+  return;
+}

fftma_module/gen/LIB_FFTMA2/build_real.c

@@ -0,0 +1,45 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include <math.h>
+#include "geostat.h"
+
+/* build_real   */
+/* build a realization in the spectral domain */
+/*n: vector with the number of cells along the */
+/*   X, Y and Z axes for the underlying grid   */
+/*   i = [0 1 2]                               */
+/*   --> 0 0 0        : n will be computed and */
+/*   updated as output                         */
+/*   --> nx ny nz: these dimensions are used   */
+/*covar: vector defining the covariance in spectral domain   */
+/*realization: vector defining the real part   */
+/*ireal: vector defining the i-part   */
+
+void build_real(int n[3],int NTOT,double *covar,double *realization,double *ireal)
+{
+  int i,j,k,maille1;
+  double temp;
+
+
+  /*decomposition and multiplication in the spectral domain*/
+  for ( k = 1; k <= n[2]; k++) {
+    for (j = 1; j <= n[1]; j++) {
+      for (i = 1; i <= n[0]; i++) {
+	maille1 = i+(j-1+(k-1)*n[1])*n[0];
+	temp = covar[maille1];
+	if (temp > 0.) {
+	  temp = sqrt(temp)/(double) NTOT;
+	} else if (temp < 0.) {
+	  temp = sqrt(-temp)/(double) NTOT;
+	}
+	realization[maille1] *= temp;
+	ireal[maille1] *= temp;
+      }
+    }
+  }
+  
+  return;
+}

fftma_module/gen/LIB_FFTMA2/clean_real.c

@@ -0,0 +1,43 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include <math.h>
+#include "geostat.h"
+
+void clean_real(struct realization_mod *realin,int n[3],struct grid_mod grid,double *vectorresult,struct realization_mod *realout)
+{  
+  int i,j,k,maille0,maille1;
+  double NTOT;
+
+  NTOT=n[0]*n[1]*n[2];
+  /*is the output realization already allocated?*/
+  /*if not, memory allocation*/
+
+  if ((*realout).vector == NULL || (*realout).n != (*realin).n)
+    {
+      (*realout).vector = (double *) malloc((*realin).n * sizeof(double));
+      if ((*realout).vector == NULL) 
+	{
+	  printf("Clean_real.c:  No memory available\n");
+	  exit;
+	}
+    }
+  
+  (*realout).n = (*realin).n;
+  (*realout).code = 1;
+  for ( k = 1; k <= grid.NZ; k++) {
+    for (j = 1; j <= grid.NY; j++) {
+      for (i = 1; i <= grid.NX; i++) {
+	maille1 = i+(j-1+(k-1)*n[1])*n[0];
+	maille0 = i-1+(j-1+(k-1)*grid.NY)*grid.NX;
+	/* Modif du 18 juin 2003 */
+	/*(*realout).vector[maille0] = vectorresult[maille1]/(double) NTOT;*/
+	(*realout).vector[maille0] = vectorresult[maille1];
+      }
+    }
+  }
+    
+  return;
+}

fftma_module/gen/LIB_FFTMA2/fftma2.c

@@ -0,0 +1,105 @@
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#include "geostat.h"
+
+
+/*FAST FOURIER TRANSFORM MOVING AVERAGE METHOD */
+/*Turns a Gaussian white noise vector into a   */
+/*spatially correlated vector                  */
+/*input:                                       */
+/*variogram: structure defining the variogram  */
+/*           model                             */
+/*grid: structure defining the grid            */
+/*n: vector with the number of cells along the */
+/*   X, Y and Z axes for the underlying grid   */
+/*   i = [0 1 2]                               */
+/*   --> 0 0 0        : n will be computed and */
+/*   updated as output                         */
+/*   --> nx ny nz: these dimensions are used   */
+/*realin: structure defining a realization -   */
+/*        must be a Gaussian white noise       */
+/*output:                                      */
+/*realout: structure defining a realization -  */
+
+void FFTMA2(struct vario_mod variogram,struct grid_mod grid,int n[3],struct realization_mod *realin,struct realization_mod *realout)
+{
+  int NTOT,i,j,k,NMAX,NDIM,ntot,nmax,NXYZ,nxyz,maille0,maille1;
+  int solver;
+  double temp;
+  double *ireal,*covar,*workr,*worki,*realization;
+  
+  /*covariance axis normalization*/
+  axes(variogram.ap,variogram.scf,variogram.Nvario);
+  
+  /*pseudo-grid definition*/
+  cgrid(variogram,grid,n);
+  
+  /*constant definition*/
+  NTOT = n[0]*n[1]*n[2];
+  ntot = NTOT+1;
+  NMAX = n[0];
+  NDIM = 3;
+  for (i=1;i<3;i++) {
+    if (n[i] > NMAX)
+      NMAX = n[i];
+    if (n[i] == 1)
+      NDIM--;
+  }
+  nmax = NMAX+1;
+  NXYZ = grid.NX*grid.NY*grid.NZ;
+  nxyz = NXYZ+1;
+  
+  /*array initialization*/
+  covar = (double *) malloc(ntot * sizeof(double));
+  testmemory(covar);
+
+  ireal = (double *) malloc(ntot * sizeof(double));
+  testmemory(ireal);
+
+  realization = (double *) malloc(ntot * sizeof(double));
+  testmemory(realization);
+
+  workr = (double *) malloc(nmax * sizeof(double));
+  testmemory(workr);
+
+  worki = (double *) malloc(nmax * sizeof(double));
+  testmemory(worki);
+	
+	/*covariance function creation*/
+  covariance(covar,variogram,grid,n);
+	
+  /*power spectrum*/
+  fourt(covar,ireal,n,NDIM,1,0,workr,worki);
+	
+  /*organization of the input Gaussian white noise*/
+  solver=0;
+  prebuild_gwn(grid,n,realin,realization,solver);
+	
+  /*forward fourier transform of the GWN*/
+  fourt(realization,ireal,n,NDIM,1,0,workr,worki);
+
+  /* build realization in spectral domain   */
+  build_real(n,NTOT,covar,realization,ireal);
+	
+  free(covar);
+	
+	/*backward fourier transform*/
+  fourt(realization,ireal,n,NDIM,0,1,workr,worki);
+	
+	
+  free(ireal);
+  free(workr);
+  free(worki);
+	
+	/*output realization*/
+  clean_real(realin,n,grid,realization,realout);
+	
+  free(realization);
+	
+  return;
+}
+
+
+
+

fftma_module/gen/LIB_FFTMA2/kgeneration.c

@@ -0,0 +1,79 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include "genlib.h"
+#include "simpio.h"
+#include "geostat.h"
+#include "toolsIO.h"
+#include "toolsFFTMA.h"
+
+/* kgeneration   */
+/* Z is the GWN with 0-mean and 1-variance */
+/* Y1  is the realization with 0-mean and variance wanted */
+/* Y is the realization with mean and variance wanted */
+
+void  kgeneration(long seed,struct grid_mod grid,struct statistic_mod stat,struct vario_mod variogram,string filename[7],struct realization_mod *Z,struct realization_mod *Y,struct realization_mod *Y1, int n[3], int *genere, int *gwnwrite, struct realization_mod *gwnoise)
+   {
+     int i,N;
+     int typelog;
+     string file1,file2;
+
+     /*generate Gaussian white noise*/
+      N = grid.NX*grid.NY*grid.NZ;
+      n[0] = 0;
+      n[1] = 0;
+      n[2] = 0;
+      printf("\n\n\n");
+
+      switch (*genere)
+	{
+	case 0:
+	  generate(&seed,N,Z);
+	  /*save the Gaussian white noise file*/
+	  if (*gwnwrite == 0)
+	    {
+	      writefile(filename[0],Z);
+	    }
+	  break;
+	case 1:
+	  (*Z).vector=(double *) malloc(N*sizeof(double));
+	  (*Z).n = N;
+	  for (i=0;i<N;i++)
+	    {
+	      (*Z).vector[i]=(*gwnoise).vector[i];
+	    }
+	  break;
+	}
+
+      /*FFTMA*/
+      FFTMA2(variogram,grid,n,Z,Y);
+
+/*       file1="prout"; */
+/*       writefile(file1,Y); */
+
+      /*add the statistics*/
+      if (stat.mean[0] != 0 || stat.variance[0]!= 1)
+	addstat2(Y,stat,Y1,Y);
+
+/*       file2="prout2"; */
+/*       writefile(file2,Y); */
+
+      /* make a log normal realization */
+      if (stat.type==1 || stat.type==2){
+	typelog=stat.type+2;
+	nor2log(Y1,typelog,Y1);
+	nor2log(Y,typelog,Y);
+      }
+
+     /*save the realization*/
+/*       writefile(filename[0],Y1); */
+ 
+      /*save the permeability realization*/
+      writefile_bin(filename[1],Y);
+      readfile_bin(filename[1],Y);
+
+
+      return;
+   }

fftma_module/gen/LIB_FFTMA2/kgeneration2.c

@@ -0,0 +1,76 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include "genlib.h"
+#include "simpio.h"
+#include "geostat.h"
+#include "toolsIO.h"
+#include "toolsFFTMA.h"
+
+/* kgeneration   */
+/* Z is the GWN with 0-mean and 1-variance */
+/* Y1  is the realization with 0-mean and variance wanted */
+/* Y is the realization with mean and variance wanted */
+
+void  kgeneration2(long seed,struct grid_mod grid,struct statistic_mod stat,struct vario_mod variogram,string filename[7],struct realization_mod *Z,struct realization_mod *Y,struct realization_mod *Y1, int n[3], int *genere, int *gwnwrite, struct realization_mod *gwnoise,int *format_file)
+   {
+     int i,N;
+     int typelog;
+     string file1,file2;
+
+     /*generate Gaussian white noise*/
+      N = grid.NX*grid.NY*grid.NZ;
+      n[0] = 0;
+      n[1] = 0;
+      n[2] = 0;
+      printf("\n\n\n");
+
+      switch (*genere)
+	{
+	case 0:
+	  generate(&seed,N,Z);
+	  /*save the Gaussian white noise file*/
+	  if (*gwnwrite == 0)
+	    {
+	      writefile(filename[0],Z);
+	    }
+	  break;
+	case 1:
+	  (*Z).vector=(double *) malloc(N*sizeof(double));
+	  (*Z).n = N;
+	  for (i=0;i<N;i++)
+	    {
+	      (*Z).vector[i]=(*gwnoise).vector[i];
+	    }
+	  break;
+	}
+
+      /*FFTMA*/
+      FFTMA2(variogram,grid,n,Z,Y);
+
+      /*add the statistics*/
+      if (stat.mean[0] != 0 || stat.variance[0]!= 1)
+	addstat2(Y,stat,Y1,Y);
+
+      /* make a log normal realization */
+      if (stat.type==1 || stat.type==2){
+
+	typelog=stat.type+2;
+	/* nor2log(Y1,typelog,Y1); */
+	nor2log(Y,typelog,Y);
+      }
+
+      switch (*format_file)
+	{
+	case 0:
+	  writefile(filename[1],Y);
+	  break;
+	case 1:
+	  writefile_bin(filename[1],Y);
+	  break;
+	}
+
+      return;
+   }

fftma_module/gen/LIB_FFTMA2/prebuild_gwn.c

@@ -0,0 +1,54 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include <math.h>
+#include "geostat.h"
+
+/* prebuild_gwn      */
+/* Produce a first construction in real space of the Gaussian white noise */
+/* grid:  structure defining the grid          */
+/*n: vector with the number of cells along the */
+/*   X, Y and Z axes for the underlying grid   */
+/*   i = [0 1 2]                               */
+/*   --> 0 0 0        : n will be computed and */
+/*   updated as output                         */
+/*   --> nx ny nz: these dimensions are used   */
+/*realin: structure defining a realization -   */
+/*        must be a Gaussian white noise       */
+/*realization: structure defining a realization*/
+
+void prebuild_gwn(struct grid_mod grid,int n[3],struct realization_mod *realin,double *realization,int solver)
+
+  {
+    int i,j,k,maille0,maille1;
+    int ntot;
+
+    ntot=n[0]*n[1]*n[2];
+    realization[0]=0.;
+    if (solver==1)
+      {
+	for (i=0;i<ntot;i++)
+	  {
+	    realization[i+1]=(*realin).vector[i];
+	  }
+      }
+    else
+      {
+	for ( k = 1; k <= n[2]; k++) {
+	  for (j = 1; j <= n[1]; j++) {
+	    for (i = 1; i <= n[0]; i++) {
+	      maille1 = i+(j-1+(k-1)*n[1])*n[0];
+	      if (i <= grid.NX && j <= grid.NY && k <= grid.NZ) {
+		maille0 = i-1+(j-1+(k-1)*grid.NY)*grid.NX;
+		realization[maille1] = (*realin).vector[maille0];
+	      } else {
+		realization[maille1] = 0.;
+	      }
+	    }
+	  }
+	}
+      }
+    return;
+  }

fftma_module/gen/LIB_FFTMA2/toolsFFTMA.h

@@ -0,0 +1,82 @@
+#include <stdlib.h>
+#include <string.h>
+#include "genlib.h"
+#include "geostat.h"
+
+#ifndef _TOOLSFFTMA_H
+#define _TOOLSFFTMA_H
+
+/* Create december, the 16th 2002 */
+/* Modified december, the 9th 2002 */
+
+/* List of functions: */
+/* ------------------ */
+/* kgeneration, FFTMA2, prebuild_gwn, build_real, addstat2, clean_real */
+
+
+/*FUNCTIONS*/
+/*----------*/
+
+void  kgeneration(long seed,struct grid_mod grid,struct statistic_mod stat,struct vario_mod variogram,string filename[8],struct realization_mod *Z,struct realization_mod *Y,struct realization_mod *Y2, int n[3], int *genere, int *gwnwrite, struct realization_mod *gwnoise);
+
+void  kgeneration2(long seed,struct grid_mod grid,struct statistic_mod stat,struct vario_mod variogram,string filename[7],struct realization_mod *Z,struct realization_mod *Y,struct realization_mod *Y1, int n[3], int *genere, int *gwnwrite, struct realization_mod *gwnoise,int *format_file) ;
+
+/*FAST FOURIER TRANSFORM Pressure Simulation   */
+/*Turns a Gaussian white noise vector into a   */
+/*spatially correlated vector                  */
+/*input:                                       */
+/*variogram: structure defining the variogram  */
+/*           model                             */
+/*grid: structure defining the grid            */
+/*n: vector with the number of cells along the */
+/*   X, Y and Z axes for the underlying grid   */
+/*   i = [0 1 2]                               */
+/*   --> 0 0 0        : n will be computed and */
+/*   updated as output                         */
+/*   --> nx ny nz: these dimensions are used   */
+/*realin: structure defining a realization -   */
+/*        must be a Gaussian white noise       */
+/*gradient: macroscopic gradient pression vector */
+/*output:                                      */
+/*realout: structure defining a realization -  */
+/*realout2: structure defining a pressure field */
+/*realout3: structure defining a xvelocity field */
+/*realout4: structure defining a yvelocity field */
+/*realout5: structure defining a zvelocity field */
+
+void FFTMA2(struct vario_mod variogram,struct grid_mod grid,int n[3],struct realization_mod *realin,struct realization_mod *realout);
+
+/* prebuild_gwn      */
+/* Produce a first construction in real space of the Gaussian white noise */
+/* grid:  structure defining the grid          */
+/*n: vector with the number of cells along the */
+/*   X, Y and Z axes for the underlying grid   */
+/*   i = [0 1 2]                               */
+/*   --> 0 0 0        : n will be computed and */
+/*   updated as output                         */
+/*   --> nx ny nz: these dimensions are used   */
+/*realin: structure defining a realization -   */
+/*        must be a Gaussian white noise       */
+/*realization: structure defining a realization*/
+
+void prebuild_gwn(struct grid_mod grid,int n[3],struct realization_mod *realin,double *realization,int solver);
+
+/* build_real   */
+/* build a realization in the spectral domain */
+/*n: vector with the number of cells along the */
+/*   X, Y and Z axes for the underlying grid   */
+/*   i = [0 1 2]                               */
+/*   --> 0 0 0        : n will be computed and */
+/*   updated as output                         */
+/*   --> nx ny nz: these dimensions are used   */
+/*covar: vector defining the covariance in spectral domain   */
+/*realization: vector defining the real part   */
+/*ireal: vector defining the i-part   */
+
+void build_real(int n[3],int NTOT,double *covar,double *realization,double *ireal);
+
+void addstat2(struct realization_mod *realin,struct statistic_mod stat ,struct realization_mod *realout,struct realization_mod *realout2);
+
+void clean_real(struct realization_mod *realin,int n[3],struct grid_mod grid,double *vectorresult,struct realization_mod *realout);
+
+#endif // define _TOOLSFFTMA_H

fftma_module/gen/LIB_FFTPSIM/FFTPSim.c

@@ -0,0 +1,162 @@
+#include <stdlib.h>
+#include <math.h>
+#include "geostat.h"
+#include "toolsludo.h"
+
+
+/*FAST FOURIER TRANSFORM Pressure Simulation   */
+/*Turns a Gaussian white noise vector into a   */
+/*spatially correlated vector                  */
+/*input:                                       */
+/*variogram: structure defining the variogram  */
+/*           model                             */
+/*grid: structure defining the grid            */
+/*n: vector with the number of cells along the */
+/*   X, Y and Z axes for the underlying grid   */
+/*   i = [0 1 2]                               */
+/*   --> 0 0 0        : n will be computed and */
+/*   updated as output                         */
+/*   --> nx ny nz: these dimensions are used   */
+/*realin: structure defining a realization -   */
+/*        must be a Gaussian white noise       */
+/*gradient: macroscopic gradient pression vector */
+/*output:                                      */
+/*realout: structure defining a realization -  */
+/*realout2: structure defining a pressure field */
+/*realout3: structure defining a xvelocity field */
+/*realout4: structure defining a yvelocity field */
+/*realout5: structure defining a zvelocity field */
+
+
+void FFTPSim(struct vario_mod variogram,struct statistic_mod stat,struct grid_mod grid,int n[3],struct realization_mod *realin,struct pressure_mod gradient,struct realization_mod *realout,struct realization_mod *realout2,struct realization_mod *realout3,struct realization_mod *realout4,struct realization_mod *realout5)
+
+{
+	int NTOT,i,j,k,NMAX,NDIM,ntot,nmax,NXYZ,nxyz,maille0,maille1;
+	double *workr,*worki,temp,temp2,coeff;
+	double *covar,*realization,*pressure;
+	double *icovar,*ireal,*ipressure;
+	double *xvelocity,*ixvelocity,*yvelocity,*iyvelocity,*zvelocity,*izvelocity;
+	double ki,kj,kk;
+
+	/*covariance axis normalization*/
+	axes(variogram.ap,variogram.scf,variogram.Nvario);
+
+	/*pseudo-grid definition*/
+	cgrid(variogram,grid,n);  
+	
+	/*constant definition*/
+	NTOT = n[0]*n[1]*n[2];
+	ntot = NTOT+1;
+	NMAX = n[0];
+	NDIM = 3;
+	for (i=1;i<3;i++) {
+		if (n[i] > NMAX)
+			NMAX = n[i];
+		if (n[i] == 1)
+			NDIM--;
+	}
+	nmax = NMAX+1;
+	NXYZ = grid.NX*grid.NY*grid.NZ;
+	nxyz = NXYZ+1;
+
+	/*array initialization*/
+	covar = (double *) malloc(ntot * sizeof(double));
+	testmemory(covar);
+
+	icovar = (double *) malloc(ntot * sizeof(double));
+	testmemory(icovar);
+
+	realization = (double *) malloc(ntot * sizeof(double));
+	testmemory(realization);
+
+	ireal = (double *) malloc(ntot * sizeof(double));
+	testmemory(ireal);
+
+	pressure = (double *) malloc(ntot * sizeof(double));
+	testmemory(pressure);
+
+	ipressure = (double *) malloc(ntot * sizeof(double));
+	testmemory(ipressure);
+
+	xvelocity = (double *) malloc(ntot * sizeof(double));
+	testmemory(xvelocity);
+
+	ixvelocity = (double *) malloc(ntot * sizeof(double));
+	testmemory(ixvelocity);
+
+	yvelocity = (double *) malloc(ntot * sizeof(double));
+	testmemory(yvelocity);
+
+	iyvelocity = (double *) malloc(ntot * sizeof(double));
+	testmemory(iyvelocity);
+
+	zvelocity = (double *) malloc(ntot * sizeof(double));
+	testmemory(zvelocity);
+
+	izvelocity = (double *) malloc(ntot * sizeof(double));
+	testmemory(izvelocity);
+
+	workr = (double *) malloc(nmax * sizeof(double));
+	testmemory(workr);
+
+	worki = (double *) malloc(nmax * sizeof(double));
+	testmemory(worki);
+
+	/*covariance function creation*/
+	covariance(covar,variogram,grid,n);
+
+	/*power spectrum*/
+	fourt(covar,icovar,n,NDIM,1,0,workr,worki);
+
+	/*organization of the input Gaussian white noise*/
+
+	prebuild_gwn(grid,n,realin,realization);
+
+	/*forward fourier transform of the GWN*/
+	fourt(realization,ireal,n,NDIM,1,0,workr,worki);
+
+	/* build realization in spectral domain   */
+	build_real(n,NTOT,covar,realization,ireal);
+
+	free(covar);
+
+      	/* pressure calculation in the spectral domain*/
+
+	build_pressure(n,grid,gradient,realization,ireal,pressure,ipressure);
+	build_velocity(n,grid,stat,gradient,realization,ireal,xvelocity,ixvelocity,1);
+	build_velocity(n,grid,stat,gradient,realization,ireal,yvelocity,iyvelocity,2);
+	build_velocity(n,grid,stat,gradient,realization,ireal,zvelocity,izvelocity,3);
+
+	/*backward fourier transform*/
+	fourt(realization,ireal,n,NDIM,0,1,workr,worki);
+       	fourt(pressure,ipressure,n,NDIM,0,1,workr,worki);
+       	fourt(xvelocity,ixvelocity,n,NDIM,0,1,workr,worki);
+       	fourt(yvelocity,iyvelocity,n,NDIM,0,1,workr,worki);
+       	fourt(zvelocity,izvelocity,n,NDIM,0,1,workr,worki);
+		
+	free(ireal);
+	free(ipressure);
+	free(ixvelocity);
+	free(iyvelocity);
+	free(izvelocity);
+	free(workr);
+	free(worki);
+	
+	/*output realization*/
+ 	/*is the output realization already allocated?*/
+	/*if not, memory allocation*/
+
+	clean_real(realin,n,grid,realization,realout);
+	clean_real(realin,n,grid,pressure,realout2);
+	clean_real(realin,n,grid,xvelocity,realout3);
+	clean_real(realin,n,grid,yvelocity,realout4);
+	clean_real(realin,n,grid,zvelocity,realout5);
+
+	free(realization);
+	free(pressure);
+	free(xvelocity);
+	free(yvelocity);
+	free(zvelocity);
+
+	return;
+}

fftma_module/gen/LIB_FFTPSIM/FFTPressure.c

@@ -0,0 +1,157 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include <math.h>
+#include "geostat.h"
+#include "pressure.h"
+
+
+/*FAST FOURIER TRANSFORM Pressure Simulation   */
+/*Turns a Gaussian white noise vector into a   */
+/*spatially correlated vector                  */
+/*input:                                       */
+/*variogram: structure defining the variogram  */
+/*           model                             */
+/*grid: structure defining the grid            */
+/*n: vector with the number of cells along the */
+/*   X, Y and Z axes for the underlying grid   */
+/*   i = [0 1 2]                               */
+/*   --> 0 0 0        : n will be computed and */
+/*   updated as output                         */
+/*   --> nx ny nz: these dimensions are used   */
+/*realin: structure defining a realization -   */
+/*        must be a Gaussian white noise       */
+/*gradient: macroscopic gradient pression vector */
+/*output:                                      */
+/*realout: structure defining a realization -  */
+/*realout2: structure defining a pressure field */
+/*realout3: structure defining a xvelocity field */
+/*realout4: structure defining a yvelocity field */
+/*realout5: structure defining a zvelocity field */
+
+
+void FFTPressure(int n[3],struct grid_mod grid,struct realization_mod *realin,struct statistic_mod stat,struct pressure_mod gradient,struct realization_mod *realout,struct realization_mod *realout2,struct realization_mod *realout3,struct realization_mod *realout4,int solver)
+
+{
+  int NTOT,i,j,k,NMAX,NDIM,ntot,nmax,NXYZ,nxyz,maille0,maille1;
+  double *workr,*worki,temp,temp2,coeff;
+  double *realization,*pressure;
+  double *ireal,*ipressure;
+  double *xvelocity,*ixvelocity,*yvelocity,*iyvelocity,*zvelocity,*izvelocity;
+  double ki,kj,kk;
+  FILE *fp;
+/*   string nomfichier; */
+
+  /*constant definition*/
+  NTOT = n[0]*n[1]*n[2];
+  ntot = NTOT+1;
+  NMAX = n[0];
+  NDIM = 3;
+  for (i=1;i<3;i++) {
+    if (n[i] > NMAX)
+      NMAX = n[i];
+    if (n[i] == 1)
+      NDIM--;
+  }
+  nmax = NMAX+1;
+  NXYZ = grid.NX*grid.NY*grid.NZ;
+  nxyz = NXYZ+1;
+  
+  realization = (double *) malloc(ntot * sizeof(double));
+  testmemory(realization);
+  
+  ireal = (double *) malloc(ntot * sizeof(double));
+  testmemory(ireal);
+  
+  pressure = (double *) malloc(ntot * sizeof(double));
+  testmemory(pressure);
+  
+  ipressure = (double *) malloc(ntot * sizeof(double));
+  testmemory(ipressure);
+  
+  xvelocity = (double *) malloc(ntot * sizeof(double));
+  testmemory(xvelocity);
+  
+  ixvelocity = (double *) malloc(ntot * sizeof(double));
+  testmemory(ixvelocity);
+  
+  yvelocity = (double *) malloc(ntot * sizeof(double));
+  testmemory(yvelocity);
+  
+  iyvelocity = (double *) malloc(ntot * sizeof(double));
+  testmemory(iyvelocity);
+  
+  zvelocity = (double *) malloc(ntot * sizeof(double));
+  testmemory(zvelocity);
+  
+  izvelocity = (double *) malloc(ntot * sizeof(double));
+  testmemory(izvelocity);
+  
+  workr = (double *) malloc(nmax * sizeof(double));
+  testmemory(workr);
+  
+  worki = (double *) malloc(nmax * sizeof(double));
+  testmemory(worki);
+  
+  /*organization of the realization*/
+  prebuild_gwn(grid,n,realin,realization,solver);
+
+  /*forward fourier transform of the GWN*/
+  fourt(realization,ireal,n,NDIM,1,0,workr,worki);
+  
+  /* pressure calculation in the spectral domain*/
+  
+  build_pressure(n,grid,gradient,realization,ireal,pressure,ipressure);
+
+  build_velocity(n,grid,stat,gradient,realization,ireal,xvelocity,ixvelocity,1);
+  build_velocity(n,grid,stat,gradient,realization,ireal,yvelocity,iyvelocity,2);
+  build_velocity(n,grid,stat,gradient,realization,ireal,zvelocity,izvelocity,3);
+  
+  /*backward fourier transform*/
+  fourt(realization,ireal,n,NDIM,0,1,workr,worki);
+  fourt(pressure,ipressure,n,NDIM,0,1,workr,worki);
+  fourt(xvelocity,ixvelocity,n,NDIM,0,1,workr,worki);
+  fourt(yvelocity,iyvelocity,n,NDIM,0,1,workr,worki);
+  fourt(zvelocity,izvelocity,n,NDIM,0,1,workr,worki);
+  
+  free(ireal);
+  free(ipressure);
+  free(ixvelocity);
+  free(iyvelocity);
+  free(izvelocity);
+  free(workr);
+  free(worki);
+
+  for (i=1;i<=NTOT;i++) 
+    realization[i]=realization[i]/(double) NTOT;
+
+  fp = fopen("realization.test", "w");
+  for (i=1;i<=NTOT;i++) 
+    fprintf(fp,"%f\n",realization[i]);
+  fclose(fp);
+
+/*   nomfichier="pression.test"; */
+  fp = fopen("pression.test", "w");
+  for (i=1;i<=NTOT;i++) 
+    fprintf(fp,"%f\n",pressure[i]);
+  fclose(fp);
+  
+  /*output realization*/
+  /*is the output realization already allocated?*/
+  /*if not, memory allocation*/
+  
+  clean_real2(realin,n,grid,solver,pressure,realout);
+  clean_real2(realin,n,grid,solver,xvelocity,realout2);
+  clean_real2(realin,n,grid,solver,yvelocity,realout3);
+  clean_real2(realin,n,grid,solver,zvelocity,realout4);
+  
+  /* 	free(realization); */
+  /* 	free(pressure); */
+  /* 	free(xvelocity); */
+  /* 	free(yvelocity); */
+  /* 	free(zvelocity); */
+  
+  return;
+}

fftma_module/gen/LIB_FFTPSIM/FFTtest.c

@@ -0,0 +1,68 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include <math.h>
+#include "geostat.h"
+
+
+/*FAST FOURIER TRANSFORM Test   */
+
+void FFTtest(int n[3],struct grid_mod grid,struct realization_mod *realin,struct realization_mod *realout,int solver)
+
+{
+  int NTOT,i,j,k,NMAX,NDIM,ntot,nmax,NXYZ,nxyz,maille0,maille1;
+  double *workr,*worki,temp,temp2,coeff;
+  double *realization;
+  double *ireal;
+  double ki,kj,kk;
+  FILE *fp;
+
+  /*constant definition*/
+  NTOT = n[0]*n[1]*n[2];
+  ntot = NTOT+1;
+  NMAX = n[0];
+  NDIM = 3;
+  for (i=1;i<3;i++) {
+    if (n[i] > NMAX)
+      NMAX = n[i];
+    if (n[i] == 1)
+      NDIM--;
+  }
+  nmax = NMAX+1;
+  NXYZ = grid.NX*grid.NY*grid.NZ;
+  nxyz = NXYZ+1;
+  
+  realization = (double *) malloc(ntot * sizeof(double));
+  testmemory(realization);
+  
+  ireal = (double *) malloc(ntot * sizeof(double));
+  testmemory(ireal);
+  
+  workr = (double *) malloc(nmax * sizeof(double));
+  testmemory(workr);
+  
+  worki = (double *) malloc(nmax * sizeof(double));
+  testmemory(worki);
+  
+  /*organization of the realization*/
+  prebuild_gwn(grid,n,realin,realization,solver);
+
+  fp = fopen("perm.test", "w");
+  for (i=1;i<=NTOT;i++) 
+    fprintf(fp,"%f\n",realization[i]);
+  fclose(fp);
+
+  /*forward fourier transform of the GWN*/
+  fourt(realization,ireal,n,NDIM,1,0,workr,worki);
+  
+  /*backward fourier transform*/
+  fourt(realization,ireal,n,NDIM,0,1,workr,worki);
+
+  fp = fopen("perm2.test", "w");
+  for (i=1;i<=NTOT;i++) 
+    fprintf(fp,"%f\n",realization[i]);
+  fclose(fp);
+  return;
+}

fftma_module/gen/LIB_FFTPSIM/Makefile.libFFTPSim

@@ -0,0 +1,34 @@
+
+########################################################################
+#
+#   Makefile for library
+#
+########################################################################
+
+
+#INTERFACE = ${BOSSE}/CODES/LIBS_C/Interface
+#INTERFACE2= ${BOSSE}/CODES/Geostat/FFTPSim/Version_binaire2/src/Interface
+
+INTERFACE = ../include
+#INTERFACE2= ../Interface
+
+INCLUDE = -I${INTERFACE}
+LIBS =  -lm -L../lib
+CCFLAGS = 
+CC = cc
+
+LIB = libFFTPSIM_${ARCH}.a
+
+NOBJS= pgeneration.o pgeneration2.o FFTPressure.o FFTtest.o build_pressure.o build_velocity.o total_pressure.o total_velocity.o clean_real2.o waveVectorCompute3D.o mat_vec.o derivReal.o
+
+.c.o: 
+	${CC} $(INCLUDE) $(CCFLAGS) -c $< 
+
+# LIBRARY
+$(LIB) : $(NOBJS) 
+	 ar cr $(LIB) $(NOBJS)
+	 ranlib $(LIB)
+
+clean : 
+	rm *.o
+

fftma_module/gen/LIB_FFTPSIM/build_pressure.c

@@ -0,0 +1,66 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include <math.h>
+#include "geostat.h"
+#include "pressure.h"
+
+/* Build_pressure                                       */
+/* build pressure in spectral domain                         */
+
+void build_pressure(int n[3],struct grid_mod grid,struct pressure_mod gradient,double *realization,double *ireal,double *pressure,double *ipressure)
+{
+  int i,j,k,maille1;
+  double ki,kj,kk;
+  double coeff,temp,temp2;
+
+      	/* pressure calculation in the spectral domain*/
+	for ( k = 1; k <= n[2]; k++) {
+	  for (j = 1; j <= n[1]; j++) {
+	    for (i = 1; i <= n[0]; i++) {
+	      maille1 = i+(j-1+(k-1)*n[1])*n[0];
+	      if (n[0]==1)
+		{
+		  ki=0.;
+		}
+	       else
+		 {
+		   ki =(double)(i-1)/(double)(grid.NX*grid.DX);
+		 }
+	      if (n[1]==1)
+		{
+		  kj=0.;
+		}
+	      else
+		{
+		  kj =(double)j/(double)(grid.NY*grid.DY);
+		}
+	      if (n[2]==1)
+		{
+		  kk=0.;
+		}
+	      else
+		{
+		  kk =(double)k/(double)(grid.NZ*grid.DZ);
+		}
+
+	      coeff = (gradient.x*ki+gradient.y*kj+gradient.z*kk)/(ki*ki+kj*kj+kk*kk);
+	      temp = realization[maille1];
+	      temp2= ireal[maille1];
+	      if (maille1==1)
+		{
+		  pressure[maille1] =0.;
+		  ipressure[maille1]=0.;
+		}
+	      else
+		{
+		  pressure[maille1] =-1./(2*3.14)*coeff*temp2;
+		  ipressure[maille1]= 1./(2*3.14)*coeff*temp;
+		}
+	    }
+	  }
+	}
+  return;
+}

fftma_module/gen/LIB_FFTPSIM/build_velocity.c

@@ -0,0 +1,117 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include <string.h>
+#include <math.h>
+#include "geostat.h"
+#include "pressure.h"
+
+/* Build_velocity                                       */
+/* Build velocity in spectral domain                    */
+
+void build_velocity(int n[3],struct grid_mod grid,struct statistic_mod stat,struct pressure_mod gradient,double *realization,double *ireal,double *xvelocity,double *ixvelocity,int direction)
+{
+  int i,j,k,maille1;
+  int x,y,z;
+  double ki,kj,kk;
+  double coeff,temp,temp2;
+  double grad;
+
+  /* x-direction velocity calculation in the spectral domain*/
+  switch(direction)
+    {
+    case 1:
+      grad = gradient.x;
+      x=1;
+      y=0;
+      z=0;
+      break;
+    case 2:
+      grad = gradient.y;
+      x=0;
+      y=1;
+      z=0;
+      break;
+    case 3:
+      grad = gradient.z;
+      x=0;
+      y=0;
+      z=1;
+      break;
+    default :
+      printf("build_velocity.c: wrong velocity direction!!! direction: %d\n",direction);
+      break;
+    }
+
+  for ( k = 1; k <= n[2]; k++) {
+    for (j = 1; j <= n[1]; j++) {
+      for (i = 1; i <= n[0]; i++) {
+	maille1 = i+(j-1+(k-1)*n[1])*n[0];
+/* 	if (i<n[0]/2) { */
+/* 	  ki =(double)i/(double)(grid.NX*grid.DX); */
+/* 	} else { */
+/* 	  ki =-(double)(n[0]-i+1)/(double)(grid.NX*grid.DX); */
+/* 	} */
+/* 	if (j<n[1]/2) { */
+/* 	  kj =(double)j/(double)(grid.NY*grid.DY); */
+/* 	} else { */
+/* 	  kj =-(double)(n[1]-j+1)/(double)(grid.NY*grid.DY); */
+/* 	} */
+/* 	if (k<n[2]/2) { */
+/* 	  kk =(double)k/(double)(grid.NZ*grid.DZ); */
+/* 	} else { */
+/* 	  kk =-(double)(n[2]-k+1)/(double)(grid.NZ*grid.DZ); */
+/* 	} */
+	
+	      if (n[0]==1)
+		{
+		  ki=0;
+		}
+	      else if (i<n[0]/2)
+		{
+		  ki =(double)i/(double)(grid.NX*grid.DX);
+		}
+	      else 
+		{
+		  ki =-(double)(n[0]-i+1)/(double)(grid.NX*grid.DX);
+		}
+
+	      if (n[1]==1)
+		{
+		  kj=0;
+		}
+	      else if (j<n[1]/2)
+		{
+		  kj =(double)j/(double)(grid.NY*grid.DY);
+		}
+	      else
+		{
+		  kj =-(double)(n[1]-j+1)/(double)(grid.NY*grid.DY);
+		}
+
+	      if (n[2]==1)
+		{
+		  kk=0;
+		}
+	      else if (k<n[2]/2)
+		{
+		  kk =(double)k/(double)(grid.NZ*grid.DZ);
+		}
+	      else
+		{
+		  kk =-(double)(n[2]-k+1)/(double)(grid.NZ*grid.DZ);
+		}
+
+	coeff = (gradient.x*ki+gradient.y*kj+gradient.z*kk)/(ki*ki+kj*kj+kk*kk);
+	temp = realization[maille1];
+	temp2= ireal[maille1];
+	
+	xvelocity[maille1] = stat.mean[0]*(grad-(ki*x+kj*y+kk*z)*coeff)*temp;
+	ixvelocity[maille1]= stat.mean[0]*(grad-(ki*x+kj*y+kk*z)*coeff)*temp2;
+      }
+    }
+  }
+
+  return;
+}

fftma_module/gen/LIB_FFTPSIM/clean_real2.c

@@ -0,0 +1,50 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include <math.h>
+#include "geostat.h"
+
+void clean_real2(struct realization_mod *realin,int n[3],struct grid_mod grid,int solver,double *vectorresult,struct realization_mod *realout)
+{  
+  int i,j,k,maille0,maille1;
+  double NTOT;
+
+  NTOT=n[0]*n[1]*n[2];
+  /*is the output realization already allocated?*/
+  /*if not, memory allocation*/
+
+  if ((*realout).vector == NULL || (*realout).n != (*realin).n)
+    {
+      (*realout).vector = (double *) malloc((*realin).n * sizeof(double));
+      if ((*realout).vector == NULL) 
+	{
+	  printf("Clean_real2.c:  No memory available\n");
+	  exit;
+	}
+    }
+  
+  (*realout).n = (*realin).n;
+  (*realout).code = 1;
+  if (solver==1)
+    {
+      for ( k = 1; k <= NTOT;k++)
+	{
+	  (*realout).vector[k-1] = vectorresult[k]/(double) NTOT;
+	}
+    }
+  else
+    {
+      for ( k = 1; k <= grid.NZ; k++) {
+	for (j = 1; j <= grid.NY; j++) {
+	  for (i = 1; i <= grid.NX; i++) {
+	    maille1 = i+(j-1+(k-1)*n[1])*n[0];
+	    maille0 = i-1+(j-1+(k-1)*grid.NY)*grid.NX;
+	    (*realout).vector[maille0] = vectorresult[maille1]/(double) NTOT;
+	  }
+	}
+      }
+    }
+  return;
+}

fftma_module/gen/LIB_FFTPSIM/derivReal.c

@@ -0,0 +1,216 @@
+#include <math.h>
+#include <stdlib.h>
+#include <stdio.h>
+#include "condor.h"
+#include "geostat.h"
+
+/* Private functions */
+void normAxes(double *vec, double *normed);
+
+
+void derivReal(struct realization_mod *Z, struct realization_mod *dZ, double *dir, struct grid_mod *grid, struct vario_mod vario) {
+
+  int n[3],i,j,k,maille,extMaille;
+  int NTOT,ntot,NMAX,nmax,NDIM;
+//  int NXYZ,nxyz;
+  double nDir[3];
+  double *table,*workr,*worki,*realization,*waveVect;
+
+
+  int Ngrid;
+  double tmp;
+  double *ExtendedWaveVect;
+
+/* Test the input real*/
+/*   if ((*Z).code != 1) { */
+/*     printf("Realization should be Standard Normal\n"); */
+/*     return; */
+/*   } */
+
+  printf("grid.Nx = %d\n",(*grid).NX);
+  printf("grid.Ny = %d\n",(*grid).NY);
+  printf("grid.Nz = %d\n",(*grid).NZ);
+
+  printf("vario.Nvario = %d\n",vario.Nvario);
+  for(i=0; i<vario.Nvario;i++) {
+    printf("Component %d:\n",i);
+    printf("Type: %d\n",vario.vario[i]);
+    printf("Exponent: %f\n",vario.alpha[i]);
+    printf("Anisotropy axes:");
+    for(j=0; j<6; j++) {
+      printf(" %f",vario.ap[6*i+j]);
+    }
+    printf("\nCorrelation length:\n");
+    for(j=0;j<3;j++) {
+      printf("axe%d :%f\n",j+1,vario.scf[3*i+j]);
+    }
+    printf("Variance: %f\n",vario.var[i]);
+  }
+
+/* covariance axis normalisation */
+  axes(vario.ap,vario.scf,vario.Nvario);
+
+  n[0]=0;
+  n[1]=0;
+  n[2]=0;
+
+/* pseudo-grid definition */  
+  cgrid(vario,*grid,n);
+
+  printf("n[0] = %d\n", n[0]);
+  printf("n[1] = %d\n", n[1]);
+  printf("n[2] = %d\n", n[2]);
+
+/* constants definition */
+  NTOT = n[0]*n[1]*n[2];
+  ntot = NTOT + 1;
+  NDIM = 3;
+  NMAX = n[0];
+
+  Ngrid = (*grid).NX*(*grid).NY*(*grid).NZ;
+
+  for (i=1;i<3;i++) {
+    if (n[i] > NMAX) NMAX = n[i];
+    if (n[i] == 1) NDIM = NDIM-1;
+  }
+  nmax = NMAX+1;
+
+  printf("NTOT = %d, ntot = %d, NMAX = %d\n",NTOT,ntot,NMAX);
+
+/* wave vector computation */
+  normAxes(dir,nDir);
+  printf("Derivation direction (normed) %f %f %f\n",nDir[0],nDir[1],nDir[2]);
+  waveVect = (double *) malloc(Ngrid*sizeof(double));
+  if (waveVect == NULL) {
+    printf("waveVectCompute.cpp : No memory available for waveVect\n");
+    return;
+  }
+  waveVectorCompute3D((*grid).NX,(*grid).NY,(*grid).NZ,nDir,waveVect);
+
+/* memory allocation */
+  table = (double *) malloc(ntot * sizeof(double));
+  if (table == NULL) {
+    printf("derivReal.cpp: No memory availble for table\n");
+    return;
+  }
+
+  realization = (double *) malloc(ntot * sizeof(double));
+  if (realization == NULL) {
+    printf("derivReal.cpp: No memory availble for realization\n");
+    return;
+  }
+
+  ExtendedWaveVect = (double *) malloc(ntot * sizeof(double));
+  if (ExtendedWaveVect == NULL) {
+    printf("derivReal.cpp: No memory availble for realization\n");
+    return;
+  }
+
+  workr = (double *) malloc(nmax * sizeof(double));
+  if (workr == NULL) {
+    printf("derivReal.cpp: No memory available for workr\n");
+    return;
+  }
+
+  worki = (double *) malloc(nmax * sizeof(double));
+  if (worki == NULL) {
+    printf("derivReal.cpp: No memory available for worki\n");
+    return;
+  }
+
+  extMaille =0;
+/* organization of the extended realization */
+  for (k=1;k<=n[2];k++) {
+    for (j=1;j<=n[1];j++) {
+      for (i=1;i<=n[0];i++) {
+	extMaille = i + ((j-1) + (((k-1) * n[1]) * n[0]));
+	if (i <= (*grid).NX && j <= (*grid).NY && k <= (*grid).NZ) {
+	  maille = i-1 + ((j-1) + ((k-1) * (*grid).NY) * (*grid).NX);
+	  realization[extMaille] = (*Z).vector[maille];
+	  ExtendedWaveVect[extMaille] = waveVect[maille];
+	} else {
+	  realization[extMaille] = 0.0;
+	  ExtendedWaveVect[extMaille] = 0.0;
+	}
+      }
+    }
+  }
+
+/* forward fourier transform of the realization */
+  fourt(realization,table,n,NDIM,1,0,workr,worki);
+  FILE *wave;
+  wave = fopen("/home/irsrvshare1/R03/UPS_FLEX/waveVector.eas","w");
+
+  for (i=1;i<ntot;i++) {
+    tmp = realization[i];
+    realization[i] = - ExtendedWaveVect[i]*table[i];
+    table[i] = - ExtendedWaveVect[i]*tmp;
+    fprintf(wave,"%f\n", ExtendedWaveVect[i]);
+  }
+  fclose(wave);
+  free(waveVect);
+
+/* backward fourier tranform */
+  fourt(realization,table,n,NDIM,0,1,workr,worki);
+
+/* free the memory */
+  free(table);
+  free(workr);
+  free(worki);
+
+  printf("after second fourt \n");
+
+  (*dZ).n = (*Z).n;
+  (*dZ).code = (*Z).code;
+  (*dZ).vector = (double *) malloc(Ngrid*sizeof(double));
+
+  FILE *real;
+  FILE *derReal;
+
+  real = fopen("/home/irsrvshare1/R03/UPS_FLEX/realization.eas","w");
+  derReal = fopen("/home/irsrvshare1/R03/UPS_FLEX/derivative.eas","w");
+
+  printf("before saving file \n");
+
+  for(k=1;k<=(*grid).NZ;k++) {
+    for(j=1;j<=(*grid).NY;j++) {
+      for(i=1;i<=(*grid).NX;i++) {
+	extMaille = i+(j-1+(k-1)*n[1])*n[0];
+	maille = i-1+(j-1+(k-1)*(*grid).NY)*(*grid).NX;
+	(*dZ).vector[maille] = realization[extMaille]/(double)NTOT;
+//	printf("Z[%d] = %f, dZ[%d] = %f\n",maille,(*Z).vector[maille],maille,(*dZ).vector[maille]);
+	fprintf(real,"%f\n",(*Z).vector[maille]);
+	fprintf(derReal,"%f\n",(*dZ).vector[maille]);
+      }
+    }
+  }
+
+  printf("after saving file \n");
+
+  fclose(real);
+  fclose(derReal);
+  free(realization);
+}
+
+
+
+void normAxes(double *vec, double *normed) {
+
+  int i;
+  double r;
+
+  r = sqrt(vec[0]*vec[0]+vec[1]*vec[1]+vec[2]*vec[2]);
+
+  if (normed == NULL) {
+    normed = (double *)malloc(3*sizeof(double));
+    if (normed == NULL) {
+      printf("derivReal.c: No memory available for normed\n");
+    }
+  }
+  
+  for (i=0;i<3;i++) {
+    normed[i] = vec[i]/r;
+  }
+
+}
+

fftma_module/gen/LIB_FFTPSIM/mat_vec.c

@@ -0,0 +1,33 @@
+/*calculates C.x/
+/* C     : symetric positive-definite matrix recorded */
+/*         (per raws) as a vector with only components */
+/*         Cij so that j <= i, i = [0...n-1]*/
+/* x     : vector, xi avec i = [0...n-1]*/
+/* b     : vector, bi avec i = [0...n-1]*/
+/* n     : dimension of matrix Cij*/
+/* */
+/* The solution vector is returned in b*/
+
+void mat_vec(double *C, double *x, double *b, int n)
+
+{
+  int i,k,l;
+  double temp;
+
+  for (i = 0; i < n; i++) {
+    temp = 0.;
+
+    for (k = 0; k < n; k++) {
+      if ( k <= i ) {
+	l = k+i*(i+1)/2;
+      } else {
+	l = i+k*(k+1)/2;
+      }
+      temp += C[l]*x[k];
+    }
+
+    b[i] = temp;
+  }
+
+  return;
+}

fftma_module/gen/LIB_FFTPSIM/pgeneration.c

@@ -0,0 +1,48 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include "genlib.h"
+#include "simpio.h"
+#include "geostat.h"
+#include "pressure.h"
+#include "toolsIO.h"
+
+void  pgeneration(int n[3],struct grid_mod grid,struct statistic_mod stat,struct vario_mod variogram,string filename[7],struct pressure_mod pression,struct realization_mod *Y,struct realization_mod *P,struct realization_mod *VX,struct realization_mod *VY,struct realization_mod *VZ, int solver)
+   {
+     int i,ntot;
+     struct realization_mod GP;
+
+     FFTPressure(n,grid,Y,stat,pression,P,VX,VY,VZ,solver);
+     /*save the delta-pressure realization*/
+     writefile(filename[2],P);
+     
+     total_pressure(grid,pression,P);
+
+     total_velocity(grid,stat.mean[0],1,pression,VX);
+     total_velocity(grid,stat.mean[0],2,pression,VY);
+     total_velocity(grid,stat.mean[0],3,pression,VZ);
+
+     /*save the total pressure realization*/
+     writefile(filename[3],P);
+     /*save the x-velocity realization*/
+     writefile(filename[4],VX);
+     /*save the y-velocity realization*/
+     writefile(filename[5],VY);
+     /*save the z-velocity realization*/
+     writefile(filename[6],VZ);
+
+     ntot=grid.NX*grid.NY*grid.NZ;
+     GP.vector = (double *) malloc(ntot * sizeof(double));
+     testmemory(GP.vector);
+     GP.n= ntot-1;
+     for (i = 0; i < ntot-1; i++) 
+       {
+	 GP.vector[i]=(*P).vector[i]-(*P).vector[i-1];
+       }
+     /*save the pressure gradient realization*/
+     writefile(filename[7],&GP);
+
+      return;
+   }

fftma_module/gen/LIB_FFTPSIM/pgeneration2.c

@@ -0,0 +1,99 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include "genlib.h"
+#include "simpio.h"
+#include "geostat.h"
+#include "pressure.h"
+#include "toolsIO.h"
+
+void  pgeneration2(int n[3],struct grid_mod grid,struct statistic_mod stat,struct vario_mod variogram,string filename[7],struct pressure_mod pression,struct realization_mod *Y,struct realization_mod *P,struct realization_mod *VX,struct realization_mod *VY,struct realization_mod *VZ, int solver, int format_file)
+   {
+     int i,ntot;
+     struct realization_mod GP;
+
+     FFTPressure(n,grid,Y,stat,pression,P,VX,VY,VZ,solver);
+
+     /*save the delta-pressure realization*/
+     switch (format_file)
+       {
+       case 0:
+	 writefile(filename[2],P);
+	 break;
+       case 1:
+	 writefile_bin(filename[2],P);
+	 break;
+       }
+     
+     total_pressure(grid,pression,P);
+     total_velocity(grid,stat.mean[0],1,pression,VX);
+     total_velocity(grid,stat.mean[0],2,pression,VY);
+     total_velocity(grid,stat.mean[0],3,pression,VZ);
+
+     /*save the total pressure realization*/
+     switch (format_file)
+       {
+       case 0:
+	 writefile(filename[3],P);
+	 break;
+       case 1:
+	 writefile_bin(filename[3],P);
+	 break;
+       }
+
+     /*save the x-velocity realization*/
+     switch (format_file)
+       {
+       case 0:
+	 writefile(filename[4],VX);
+	 break;
+       case 1:
+	 writefile_bin(filename[4],VX);
+	 break;
+       }
+
+     /*save the y-velocity realization*/
+     switch (format_file)
+       {
+       case 0:
+	 writefile(filename[5],VY);
+	 break;
+       case 1:
+	 writefile_bin(filename[5],VY);
+	 break;
+       }
+     /*save the z-velocity realization*/
+     switch (format_file)
+       {
+       case 0:
+	 writefile(filename[6],VZ);
+	 break;
+       case 1:
+	 writefile_bin(filename[6],VZ);
+	 break;
+       }
+
+     ntot=grid.NX*grid.NY*grid.NZ;
+     GP.vector = (double *) malloc(ntot * sizeof(double));
+     testmemory(GP.vector);
+     GP.n= ntot-1;
+     for (i = 0; i < ntot-1; i++) 
+       {
+	 GP.vector[i]=(*P).vector[i]-(*P).vector[i-1];
+       }
+
+     /*save the pressure gradient realization*/
+      switch (format_file)
+       {
+       case 0:
+	 writefile(filename[7],&GP);
+	 break;
+       case 1:
+	 writefile_bin(filename[7],&GP);
+	 break;
+       }
+
+      return;
+   }

fftma_module/gen/LIB_FFTPSIM/toolsFFTPSIM.h

@@ -0,0 +1,59 @@
+#include <string.h>
+#include "geostat.h"
+#include "pressure.h"
+
+
+#ifndef _TOOLSFFTPSIM_H
+#define _TOOLSFFTPSIM_H
+
+/* Create december, the 16th 2002 */
+
+/* List of functions: */
+/* ------------------ */
+/* pgeneration, FFTPSim, FFTPressure, build_pressure, build_velocity,total_pressure,total_velocity, clean_real2 */
+
+/*Functions */
+/*----------*/
+
+void  pgeneration(int n[3],struct grid_mod grid,struct statistic_mod stat,struct vario_mod variogram,string filename[8],struct pressure_mod pression,struct realization_mod *Y,struct realization_mod *P,struct realization_mod *VX,struct realization_mod *VY,struct realization_mod *VZ, int solver);
+
+void  pgeneration2(int n[3],struct grid_mod grid,struct statistic_mod stat,struct vario_mod variogram,string filename[8],struct pressure_mod pression,struct realization_mod *Y,struct realization_mod *P,struct realization_mod *VX,struct realization_mod *VY,struct realization_mod *VZ, int solver, int format_file);
+
+void FFTPSim(struct vario_mod variogram,struct statistic_mod stat,struct grid_mod grid,int n[3],struct realization_mod *realin,struct pressure_mod gradient,struct realization_mod *realout,struct realization_mod *realout2,struct realization_mod *realout3,struct realization_mod *realout4,struct realization_mod *realout5);
+
+void FFTPressure(int n[3],struct grid_mod grid,struct realization_mod *realin,struct statistic_mod stat,struct pressure_mod gradient,struct realization_mod *realout,struct realization_mod *realout2,struct realization_mod *realout3,struct realization_mod *realout4, int solver);
+
+void build_pressure(int n[3],struct grid_mod grid,struct pressure_mod gradient,double *realization,double *ireal,double *pressure,double *ipressure);
+
+void build_velocity(int n[3],struct grid_mod grid,struct statistic_mod stat,struct pressure_mod gradient,double *realization,double *ireal,double *xvelocity,double *ixvelocity,int direction);
+
+/* total_pressure                                       */
+/* Build total pressure                                 */
+/* grid: structure defining the grid                    */
+/* pression:: structure defining the gradient pressure  */
+/* realout: structure defining a realization            */
+
+void total_pressure(struct grid_mod grid,struct pressure_mod gradient,struct realization_mod *realout);
+
+/* total_velocity                                       */
+/* Build total velocity in one direction                */
+/* grid: structure defining the grid                    */
+/* mean: permeability mean                              */
+/* dgradient: macroscopic pressure gradient in wanted direction   */
+/* realout: structure defining a X velocity realization */
+
+void total_velocity(struct grid_mod grid,double mean,int direction,struct pressure_mod gradient,struct realization_mod *realout);
+
+void clean_real2(struct realization_mod *realin,int n[3],struct grid_mod grid,int solver,double *vectorresult,struct realization_mod *realout);
+
+void normAxes(double *vec, double *normed);
+void waveVectorCompute1D(int n,double *vec);
+
+void waveVectorCompute3D(int nX,int nY, int nZ, /*float dX, float dY, float dZ,*/ double nDir[3], double *waveVect);
+
+void derivReal(struct realization_mod *Z, struct realization_mod *dZ, double *dir, struct grid_mod *grid, struct vario_mod vario);
+
+void mat_vec(double *C, double *x, double *b, int n);
+
+
+#endif // define _TOOLSFFTPSIM_H

fftma_module/gen/LIB_FFTPSIM/total_pressure.c

@@ -0,0 +1,35 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include "geostat.h"
+#include "pressure.h"
+
+
+
+/* total_pressure                                       */
+/* Build total pressure                                 */
+/* grid: structure defining the grid                    */
+/* pression: structure defining the gradient pressure  */
+/* realout: structure defining a realization            */
+
+void total_pressure(struct grid_mod grid,struct pressure_mod gradient,struct realization_mod *realout)
+{
+  int i,j,k,maille0,maille1;
+  double temp,reference;
+
+  reference=abs(gradient.x)*grid.NX*grid.DX+abs(gradient.y)*grid.NY*grid.DY+abs(gradient.z)*grid.NZ*grid.DZ;
+ /* pressure reconstruction */
+  for ( k = 0; k < grid.NZ; k++) {
+    for (j = 0; j < grid.NY; j++) {
+      for (i = 0; i < grid.NX; i++) {
+	maille1 = i+(j+k*grid.NY)*grid.NX;
+/* 	temp=reference+gradient.x*i*grid.DX+gradient.y*j*grid.DY+gradient.z*k*grid.DZ+(*realout).vector[maille1]; */
+	temp=-gradient.x*(i+1)/grid.NX-gradient.y*(j+1)/grid.NY-gradient.z*(k+1)/grid.NZ+(*realout).vector[maille1];
+	(*realout).vector[maille1]=temp;
+      }
+    }
+  }
+
+  return;
+}

fftma_module/gen/LIB_FFTPSIM/total_velocity.c

@@ -0,0 +1,50 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include "geostat.h"
+#include "pressure.h"
+
+
+
+/* total_velocity                                       */
+/* Build total velocity                                 */
+/* grid: structure defining the grid                    */
+/* mean: permeability mean                              */
+/* dgradient: macroscopic pressure gradient in wanted direction   */
+/* realout: structure defining a X velocity realization */
+
+void total_velocity(struct grid_mod grid,double mean,int direction,struct pressure_mod gradient,struct realization_mod *realout)
+{
+  int i,j,k,maille0,maille1;
+  double temp,grad;
+  switch(direction)
+    {
+    case 1:
+      grad = gradient.x/(grid.NX*grid.DX);
+      break;
+    case 2:
+      grad = gradient.y/(grid.NY*grid.DY);/*  *grid.NY*grid.DY; */
+      break;
+    case 3:
+      grad = gradient.z/(grid.NZ*grid.DZ); /* *grid.NZ*grid.DZ; */
+      break;
+    default :
+      printf("build_velocity.c: wrong velocity direction!!! direction: %d\n",direction);
+      break;
+    }
+
+  /* x velocity reconstruction */
+  for ( k = 0; k < grid.NZ; k++) {
+    for (j = 0; j < grid.NY; j++) {
+      for (i = 0; i < grid.NX; i++) {
+	maille1 = i+(j+k*grid.NY)*grid.NX;
+	temp=mean*grad+(*realout).vector[maille1];
+/* 	temp=mean*grad; */
+	(*realout).vector[maille1]=temp;
+      }
+    }
+  }
+
+  return;
+}

fftma_module/gen/LIB_FFTPSIM/waveVectorCompute3D.c

@@ -0,0 +1,156 @@
+//#include <fstream.h>
+//#include <iostream>
+#include <stdio.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include <math.h>
+
+//using namespace std;
+
+/*Private functions                                        */
+void waveVectorCompute1D(int n,double *vec);
+
+void waveVectorCompute3D(int nX,int nY, int nZ, /*double dX, double dY, double dZ,*/ double nDir[3], double *waveVect) {
+
+  int nTot;
+  double *vecX,*vecY,*vecZ;
+  double *waveVect3DX, *waveVect3DY, *waveVect3DZ;
+
+  int i, j, k, maille;
+
+  nTot = nX*nY*nZ;
+//  printf("nX = %d, nY = %d, nZ = %d, nTot = %d\n",nX,nY,nZ,nTot);
+//  printf("Entering waveVectorCompute3D\n");
+
+/*Memory allocation                                        */
+  waveVect3DX = (double *)malloc(nTot * sizeof(double));
+  if (waveVect3DX == NULL) {
+    printf("waveVectCompute.cpp : No memory available for waveVect3DX\n");
+    return;
+  }
+  waveVect3DY = (double *)malloc(nTot * sizeof(double));
+  if (waveVect3DY == NULL) {
+    printf("waveVectCompute.cpp : No memory available for waveVect3DY\n");
+    return;
+  }
+  waveVect3DZ = (double *)malloc(nTot * sizeof(double));
+  if (waveVect3DZ == NULL) {
+    printf("waveVectCompute.cpp : No memory available for waveVect3DZ\n");
+    return;
+  }
+
+  vecX = (double *)malloc(nX * sizeof(double));
+  if (vecX == NULL) {
+    printf("waveVectCompute.cpp : No memory available for vecX\n");
+    return;
+  }
+
+  vecY = (double *)malloc(nY * sizeof(double));
+  if (vecY == NULL) {
+    printf("waveVectCompute.cpp : No memory available for vecY\n");
+    return;
+  }
+
+  vecZ = (double *)malloc(nZ * sizeof(double));
+  if (vecZ == NULL) {
+    printf("waveVectCompute.cpp : No memory available for vecZ\n");
+    return;
+  }
+
+//  printf("memory allocation done.\n");
+
+  waveVectorCompute1D(nX,vecX);
+  waveVectorCompute1D(nY,vecY);
+  waveVectorCompute1D(nZ,vecZ);
+//  printf("waveVectorCompute1D: done!\n");
+
+  for(k = 0; k < nZ; k++) {
+//    printf("k=%d\n",k);
+    for(j = 0; j < nY; j++) {
+//      printf("j=%d: ",j);
+      for(i = 0; i < nX; i++) {
+	maille = i + (j + (k)*nY)*nX;
+//	waveVect3DX[maille] = vecX[i]/(nX*dX);
+//	waveVect3DY[maille] = vecY[j]/(nY*dY);
+//	waveVect3DZ[maille] = vecZ[k]/(nZ*dZ);
+	waveVect3DX[maille] = vecX[i];
+	waveVect3DY[maille] = vecY[j];
+	waveVect3DZ[maille] = vecZ[k];
+//	printf("i=%d: %f ",i,vecZ[k]);
+      }
+//      printf("\n");
+    }
+  }
+//  printf("waveVector3DX, Y and Z rearanged\n");
+  free(vecX);
+  free(vecY);
+  free(vecZ);
+  if (waveVect == NULL) {
+    printf("allocate memory for waveVect\n");
+    waveVect = (double *) malloc((nTot+1)*sizeof(double));
+    if (waveVect == NULL) {
+      printf("waveVectCompute.cpp : No memory available for waveVect\n");
+      return;
+    }
+    printf("after allocate memory for waveVect\n");
+  }
+
+  for (i=1;i<=nTot;i++) {
+    waveVect[i] = nDir[0]*waveVect3DX[i-1] + nDir[1]*waveVect3DY[i-1] + nDir[2]*waveVect3DZ[i-1];
+//    printf("waveVect[%d] = %f\n",i,waveVect[i]);
+  }
+//  printf("waveVector rearanged\n");
+
+  free(waveVect3DX);
+  free(waveVect3DY);
+  free(waveVect3DZ);
+
+}
+
+void waveVectorCompute1D(int n,double *vec){
+
+  int midPoint,k;
+
+  if(ceil(n/2) - floor(n/2) < 1.) {
+//    printf("coucou\n");
+/*n is even                                                */
+    midPoint = (int) floor(n/2);
+    vec[midPoint] = (double) midPoint;
+  } else {
+/*n is odd                                                 */
+    midPoint = (int) floor(n/2)-1;
+    vec[midPoint] = (double) midPoint+1;
+  }
+  for (k=1;k<midPoint;k++) {
+    vec[k] = (double) k;
+    vec[n-k] = (double) -(k);
+  }
+  vec[0] = (double) 0;
+}
+
+/*int main() {
+
+  double *vecX;
+  int k;
+
+  vecX = (double *)malloc(10 * sizeof(double));
+  if (vecX == NULL) {
+    printf("waveVectCompute.cpp : No memory available for vecX\n");
+    return(0);
+  }
+  printf("avant\n");
+  waveVectorCompute1D(10,vecX);
+  printf("apres\n");
+
+  ofstream vec;
+  vec.open("waveVect1D.pol");
+  for (k=0;k<10;k++)
+    vec << vecX[k] << "\n";
+  vec.close();
+  return(1);
+}*/
+
+
+

fftma_module/gen/LIB_IO/Makefile.libIO

@@ -0,0 +1,31 @@
+#
+########################################################################
+#
+#   Makefile for library
+#
+########################################################################
+#
+
+#INTERFACE = ${BOSSE}/CODES/LIBS_C/Interface
+INTERFACE = ../include
+
+INCLUDE = -I${INTERFACE}
+CC = cc
+CCFLAGS =
+
+
+LIB = libIO_${ARCH}.a
+
+NOBJS= inputdata.o inputfiledata.o debuginput.o readdata.o readfile_bin.o writefile.o writefile_bin.o testmemory.o testopenfile.o readdata2.o readdata3.o
+
+.c.o: 
+	${CC} $(INCLUDE) $(CCFLAGS) -c $< 
+
+# LIBRARY
+$(LIB) : $(NOBJS) 
+	 ar cr $(LIB) $(NOBJS)
+	 ranlib $(LIB)
+
+clean : 
+	rm *.o
+

fftma_module/gen/LIB_IO/allouememoire.c

@@ -0,0 +1,16 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include <math.h>
+
+void allouememoire(double *realint, string variable)
+{
+
+  if (realint == NULL) {
+    printf("Testmemory.c:  No memory available for %s\n",variable);
+    exit;
+  }
+  return;
+}

fftma_module/gen/LIB_IO/debuginput.c

@@ -0,0 +1,73 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include "genlib.h"
+#include "geostat.h"
+#include "toolsIO.h"
+
+
+/* DebugInput  */
+/*             */
+/* Display the input data */
+/* seed: seed                                                                    */
+/* grid: structure defining the actual grid                                      */
+/* filename: name of files                                                       */
+/* variogram: struture defining the variogram model                              */
+/* stat: struture defining the mean and the variance of permeability realization */
+/* pression: structure defining the gradient pressure                            */
+
+void debuginput(long *seed,struct grid_mod *grid,string filename[8],struct vario_mod *variogram,struct statistic_mod *stat,struct pressure_mod *pression,int *Ksolver,int *genere, int *gwnwrite)
+{
+  int i;
+
+
+  /* debug du 8/7/2002 */
+  printf("\n\n");
+  
+  printf("Starting seed (integer): %d\n",(*seed));
+  printf("Number of cells along the X axis: %d\n",(*grid).NX);
+  printf("Number of cells along the Y axis: %d\n",(*grid).NY);
+  printf("Number of cells along the Z axis: %d\n",(*grid).NZ);
+  printf("cell length along the X axis: %6.4f\n",(*grid).DX);
+  printf("cell length along the Y axis: %6.4f\n",(*grid).DY);
+  printf("cell length along the Z axis: %6.4f\n",(*grid).DZ);
+  printf("Number of structures for the variogram: %d\n",(*variogram).Nvario);
+  i=0;
+  printf("Weight: %6.4f\n",(*variogram).var[i]);
+  printf("Type of variogram: %d\n",(*variogram).vario[i]);
+  printf("Exponent: %6.4f\n",(*variogram).alpha[i]);
+
+  printf("Mean of the output realization: %15.8f\n",(*stat).mean[0]);
+  printf("Variance of the output realization: %6.4f\n",(*stat).variance[0]);
+  printf("Structure of the field (0-normal case 1-lognormal case 2-log10 case) : %d\n",(*stat).type);
+
+  /*output files*/
+  printf("output filename for permeability realization: %s\n",  filename[1]);
+  printf("\n\n");
+  if (*gwnwrite == 0)
+    {
+      printf("K field generation with Gaussian white noise!\n");
+      printf("output filename for Gaussian white noise: %s\n",filename[0]);
+    }
+  printf("\n\n");
+  if ((*Ksolver == 1) | (*Ksolver == 2))
+    {
+      printf("P field generation: %d/n",*Ksolver);
+      printf("output filename for pressure realization: %s\n",  filename[2]);
+      printf("output filename for pressure total realization: %s\n",  filename[3]);
+      printf("output filename for x-velocity realization: %s\n",  filename[4]);
+      printf("output filename for y-velocity realization: %s\n",  filename[5]);
+      printf("output filename for z-velocity realization: %s\n",  filename[6]);
+      printf("output filename for pressure gradient realization: %s\n",  filename[7]);
+      
+      /*Pressure data*/
+      printf("Pressure gradient in x direction: %6.4f\n",(*pression).x);
+      printf("Pressure gradient in y direction: %6.4f\n",(*pression).y);
+      printf("Pressure gradient in z direction: %6.4f\n",(*pression).z);
+    }
+  printf("\n\n");
+  
+  return;
+}

fftma_module/gen/LIB_IO/inputdata.c

@@ -0,0 +1,122 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include "genlib.h"
+#include "simpio.h"
+#include "geostat.h"
+#include "toolsIO.h"
+
+
+
+/* Inputdata   */
+/*              */
+/* input data needed for realizations*/
+/* seed: seed                                                                    */
+/* grid: structure defining the actual grid                                      */
+/* filename: name of files                                                       */
+/* variogram: struture defining the variogram model                              */
+/* stat: struture defining the mean and the variance of permeability realization */
+/* pression: structure defining the gradient pressure                            */
+
+void inputdata(long *seed,struct grid_mod *grid,string filename[7],struct vario_mod *variogram,struct statistic_mod *stat,struct pressure_mod *pression)
+{
+  int i,j;
+
+
+   /*seed*/
+  printf("Starting seed (integer): \n");
+  *seed = GetInteger();
+
+  /*Grid description*/
+  printf("Number of cells along the X axis: \n");
+  (*grid).NX = GetInteger();
+  printf("Number of cells along the Y axis: \n");
+  (*grid).NY = GetInteger();
+  printf("Number of cells along the Z axis: \n");
+  (*grid).NZ = GetInteger();
+  printf("cell length along the X axis: \n");
+  (*grid).DX = GetReal();
+  printf("cell length along the Y axis: \n");
+  (*grid).DY = GetReal();
+  printf("cell length along the Z axis: \n");
+  (*grid).DZ = GetReal();
+
+  /*output file*/
+  printf("output filename for Gaussian white noise: \n");
+  filename[0] = GetLine();
+
+  /*variogram description*/
+  printf("Number of structures for the variogram: \n");
+  (*variogram).Nvario = GetInteger();
+  (*variogram).vario = (int *) malloc((*variogram).Nvario * sizeof(int));
+  (*variogram).alpha = (double *) malloc((*variogram).Nvario * sizeof(double));      
+  (*variogram).ap = (double *) malloc(9*(*variogram).Nvario * sizeof(double));
+  (*variogram).scf = (double *) malloc(3*(*variogram).Nvario * sizeof(double));
+  (*variogram).var = (double *) malloc((*variogram).Nvario * sizeof(double));
+  for (i= 0; i < (*variogram).Nvario; i++) {
+    printf("i %d\n",i);
+    printf("Weight: \n");
+    (*variogram).var[i] = GetReal();
+    printf("Type of variogram: \n");
+    (*variogram).vario[i] = GetInteger();
+    printf("Exponent: \n");
+    (*variogram).alpha[i] = GetReal();
+    printf("Correlation lengths (3): \n");
+    for (j = 0; j < 3; j++) 
+      (*variogram).scf[i*3+j]=GetReal();
+    printf("Coordinates of the first two main axes (first axis first, then second): \n");
+    for (j = 0; j < 6; j++) 
+      (*variogram).ap[i*9+j] = GetReal();
+  }
+
+  /*statistical data*/
+  (*stat).nblock_mean = 1;
+  (*stat).nblock_var = 1;
+  (*stat).mean = (double *)malloc((*stat).nblock_mean * sizeof(double));
+  if ((*stat).mean == NULL)
+    Error("No memory available");
+  (*stat).variance = (double *)malloc((*stat).nblock_var * sizeof(double));
+  if ((*stat).variance == NULL)
+    Error("No memory available");
+  printf("Mean of the output realization: \n");
+  (*stat).mean[0] = GetReal();
+  printf("Variance of the output realization: \n");
+  (*stat).variance[0] = GetReal();
+  printf("Structure of the field (0-normal case 1-lognormal case 2-log10 case) : \n");
+  (*stat).type = GetInteger();
+
+  /*output file*/
+  printf("output filename for permeability realization: \n");
+  filename[1] = GetLine();
+
+  /*Pressure data*/
+  printf("Macroscopic pressure gradient in x direction: \n");
+  (*pression).x = GetReal();
+  printf("Macroscopic pressure gradient in y direction: \n");
+  (*pression).y = GetReal();
+  printf("Macroscopic pressure gradient in z direction: \n");
+  (*pression).z = GetReal();
+
+
+  /*output pressure file*/
+  printf("output filename for pressure realization: \n");
+  filename[2] = GetLine();
+
+  /*output pressure totale file*/
+  printf("output filename for total pressure realization: \n");
+  filename[3] = GetLine();
+
+  /*output x-velocity file*/
+  printf("output filename for x-velocity realization: \n");
+  filename[4] = GetLine();
+  /*output y-velocity file*/
+  printf("output filename for y-velocity realization: \n");
+  filename[5] = GetLine();
+  /*output z-velocity file*/
+  printf("output filename for z-velocity realization: \n");
+  filename[6] = GetLine();
+
+  return;
+}

fftma_module/gen/LIB_IO/inputfiledata.c

@@ -0,0 +1,71 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include "genlib.h"
+#include "simpio.h"
+#include "geostat.h"
+#include "toolsIO.h"
+
+void inputfiledata(string inputfile,long *seed,struct grid_mod *grid,string filename[7],struct vario_mod *variogram,struct statistic_mod *stat,struct pressure_mod *pression)
+{
+  FILE *fp;
+  int i,j;
+
+  fp=fopen(inputfile,"r");
+  if(fp== NULL)
+    {
+      printf("Erreur d'ouverture du fichier\n");
+      exit(0);
+    }
+  *seed=atoi(ReadLine(fp));
+  (*grid).NX = atoi(ReadLine(fp));
+  (*grid).NY = atoi(ReadLine(fp));
+  (*grid).NZ = atoi(ReadLine(fp));
+  (*grid).DX = atof(ReadLine(fp));
+  (*grid).DY = atof(ReadLine(fp));
+  (*grid).DZ = atof(ReadLine(fp));
+  filename[0] = ReadLine(fp);
+  (*variogram).Nvario = atoi(ReadLine(fp));
+
+  (*variogram).vario = (int *) malloc((*variogram).Nvario * sizeof(int));
+  (*variogram).alpha = (double *) malloc((*variogram).Nvario * sizeof(double));      
+  (*variogram).ap = (double *) malloc(9*(*variogram).Nvario * sizeof(double));
+  (*variogram).scf = (double *) malloc(3*(*variogram).Nvario * sizeof(double));
+  (*variogram).var = (double *) malloc((*variogram).Nvario * sizeof(double));
+  for (i= 0; i < (*variogram).Nvario; i++) {
+    (*variogram).var[i] = atof(ReadLine(fp));
+    (*variogram).vario[i] = atoi(ReadLine(fp));
+    (*variogram).alpha[i] = atof(ReadLine(fp));
+    for (j = 0; j < 3; j++) 
+      (*variogram).scf[i*3+j]= atof(ReadLine(fp));
+    for (j = 0; j < 6; j++) 
+      (*variogram).ap[i*9+j] = atof(ReadLine(fp));
+  }
+  /*statistical data*/
+  (*stat).nblock_mean = 1;
+  (*stat).nblock_var = 1;
+  (*stat).mean = (double *)malloc((*stat).nblock_mean * sizeof(double));
+  if ((*stat).mean == NULL)
+    Error("No memory available");
+  (*stat).variance = (double *)malloc((*stat).nblock_var * sizeof(double));
+  if ((*stat).variance == NULL)
+    Error("No memory available");
+
+  (*stat).mean[0] = atof(ReadLine(fp));
+  (*stat).variance[0] = atof(ReadLine(fp));
+  (*stat).type = atoi(ReadLine(fp));
+
+  filename[1] = ReadLine(fp);
+  (*pression).x = atof(ReadLine(fp));
+  (*pression).y = atof(ReadLine(fp));
+  (*pression).z = atof(ReadLine(fp));
+  filename[2] = ReadLine(fp);
+  filename[3] = ReadLine(fp);
+  filename[4] = ReadLine(fp);
+  filename[5] = ReadLine(fp);
+  filename[6] = ReadLine(fp);
+  fclose(fp);
+  return;
+}

fftma_module/gen/LIB_IO/pressure.h

@@ -0,0 +1,21 @@
+#include <stdlib.h>
+#include <string.h>
+#include "genlib.h"
+#include "geostat.h"
+
+#ifndef _PRESSURE_H
+#define _PRESSURE_H
+
+/*STRUCTURES*/
+/*----------*/
+
+/* pressure_mod                                        */
+/* x:  macroscopic gradient value in x direction       */
+/* y:  macroscopic gradient value in x direction       */
+/* z:  macroscopic gradient value in x direction       */
+struct pressure_mod {
+  double x,y,z;
+};
+
+
+#endif // define _PRESSURE_H

fftma_module/gen/LIB_IO/readdata.c

@@ -0,0 +1,204 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include "genlib.h"
+#include "simpio.h"
+#include "geostat.h"
+#include "pressure.h"
+#include "toolsIO.h"
+
+
+void readdata(long *seed,struct grid_mod *grid,string filename[8],struct vario_mod *variogram,struct statistic_mod *stat,struct pressure_mod *pression,int *Ksolver,int *genere, int *gwnwrite, struct realization_mod *Kfield,struct  realization_mod *gwnoise, char *argv[])
+{
+  FILE *fp;
+  int i,j,n;
+  char *file1,*file2,*file3,*file4,*file5;
+  char *prog=argv[0];
+  double tmp;
+
+  file1=argv[1];
+  file2=argv[2];
+
+  /* Ouverture du fichier de données principal */
+
+  if ((fp=fopen(file1,"r")) == NULL)
+    {
+      fprintf(stderr,"%s :impossible d'ouvrir %s\n",prog, file1);
+      exit(1);
+    }
+  else
+    {
+      *Ksolver = atoi(ReadLine(fp));
+      *genere = atoi(ReadLine(fp));
+      *gwnwrite = atoi(ReadLine(fp));
+      if (*gwnwrite==0)
+	{
+	  filename[0] = ReadLine(fp);
+	}
+      (*grid).NX = atoi(ReadLine(fp));
+      (*grid).NY = atoi(ReadLine(fp));
+      (*grid).NZ = atoi(ReadLine(fp));
+      (*grid).DX = atof(ReadLine(fp));
+      (*grid).DY = atof(ReadLine(fp));
+      (*grid).DZ = atof(ReadLine(fp));
+
+      fclose(fp);
+    }
+  n=(*grid).NX*(*grid).NY*(*grid).NZ;
+
+/* Ouverture du fichier de données sur le champ de perméabilité */
+
+  if ((fp=fopen(file2,"r")) == NULL)
+    {
+      fprintf(stderr,"%s :impossible d'ouvrir %s\n",prog, file2);
+      exit(1);
+    }
+  else
+    {
+      *seed=atoi(ReadLine(fp));
+      (*variogram).Nvario = atoi(ReadLine(fp));
+      (*variogram).vario = (int *) malloc((*variogram).Nvario * sizeof(int));
+      (*variogram).alpha = (double *) malloc((*variogram).Nvario * sizeof(double));      
+      (*variogram).ap = (double *) malloc(9*(*variogram).Nvario * sizeof(double));
+      (*variogram).scf = (double *) malloc(3*(*variogram).Nvario * sizeof(double));
+      (*variogram).var = (double *) malloc((*variogram).Nvario * sizeof(double));
+      for (i= 0; i < (*variogram).Nvario; i++) {
+	(*variogram).var[i] = atof(ReadLine(fp));
+	(*variogram).vario[i] = atoi(ReadLine(fp));
+	(*variogram).alpha[i] = atof(ReadLine(fp));
+	for (j = 0; j < 3; j++) 
+	  (*variogram).scf[i*3+j]= atof(ReadLine(fp));
+	for (j = 0; j < 6; j++) 
+	  (*variogram).ap[i*9+j] = atof(ReadLine(fp));
+      }
+      /*statistical data*/
+      (*stat).nblock_mean = 1;
+      (*stat).nblock_var = 1;
+      (*stat).mean = (double *)malloc((*stat).nblock_mean * sizeof(double));
+      if ((*stat).mean == NULL)
+	Error("No memory available");
+      (*stat).variance = (double *)malloc((*stat).nblock_var * sizeof(double));
+      if ((*stat).variance == NULL)
+	Error("No memory available");
+      
+      (*stat).mean[0] = atof(ReadLine(fp));
+      (*stat).variance[0] = atof(ReadLine(fp));
+      (*stat).type = atoi(ReadLine(fp));
+      
+      filename[1] = ReadLine(fp);
+      fclose(fp);
+    }
+
+    switch (*Ksolver)
+     {
+     case 0:
+       /*  Ouverture du fichier contenant le gaussian white noise */
+       if (*genere == 1)
+	 {
+	   file3=argv[3];
+	   if ((fp=fopen(file3,"r")) == NULL)
+	     {
+	       fprintf(stderr,"%s :impossible d'ouvrir %s\n",prog, file3);
+	       exit(1);
+	     }
+	   else
+	     {
+	       /* Ouverture du champ de permeabilite K */
+	       (*gwnoise).vector = (double *) malloc(n * sizeof(double));
+	       for (i=0;i<n;i++)
+		 {
+		   /* 		 (*gwnoise).vector[i]=atof(ReadLine(fp)); */
+		   /* sscanf(ReadLine(fp)," %Lf %c",gwnoise.vector[i],&merde); */
+		   fscanf(fp,"%lf",&tmp);
+		   (*gwnoise).vector[i]= tmp;
+		 }
+	       fclose(fp);
+	     }
+	 }
+       break;
+     case 1:
+       file3=argv[3];
+       /* Ouverture du fichier de données de pression*/
+       if ((fp=fopen(file3,"r")) == NULL)
+	 {
+	   fprintf(stderr,"%s :impossible d'ouvrir %s\n",prog, file3);
+	   exit(1);
+	 }
+       else
+	 {
+	   /*  testopenfile(fp); */ 
+	   filename[2] = ReadLine(fp);
+	   filename[3] = ReadLine(fp);
+	   (*pression).x = atof(ReadLine(fp));
+	   (*pression).y = atof(ReadLine(fp));
+	   (*pression).z = atof(ReadLine(fp));
+	   filename[4] = ReadLine(fp);
+	   filename[5] = ReadLine(fp);
+	   filename[6] = ReadLine(fp);
+	   filename[7] = ReadLine(fp);
+	   fclose(fp);
+	 }
+
+       /* Ouverture du champ de permeabilite K */
+       (*Kfield).vector = (double *) malloc(n * sizeof(double));
+       file4=argv[4];
+       if ((fp=fopen(file4,"r")) == NULL)
+	 {
+	   fprintf(stderr,"%s :impossible d'ouvrir %s\n",prog, file4);
+	   exit(1);
+	 }
+       else
+	 {
+	   for (i=0;i<n;i++)
+	     (*Kfield).vector[i]=atof(ReadLine(fp));
+	   fclose(fp);
+	 }
+       break;
+     case 2:
+       
+       /* Ouverture du fichier de données de pression */
+       file3=argv[3];
+       if ((fp=fopen(file3,"r")) == NULL)
+	 {
+	   fprintf(stderr,"%s :impossible d'ouvrir %s\n",prog, file3);
+	   exit(1);
+	 }
+       else
+	 {
+	   /*  testopenfile(fp); */ 
+	   filename[2] = ReadLine(fp);
+	   filename[3] = ReadLine(fp);
+	   (*pression).x = atof(ReadLine(fp));
+	   (*pression).y = atof(ReadLine(fp));
+	   (*pression).z = atof(ReadLine(fp));
+	   filename[4] = ReadLine(fp);
+	   filename[5] = ReadLine(fp);
+	   filename[6] = ReadLine(fp);
+	   filename[7] = ReadLine(fp);
+	   fclose(fp);
+	 }
+       /*  Ouverture du fichier contenant le gaussian white noise */
+       if (*genere == 1)
+	 {       
+	   file4=argv[4];
+	   if ((fp=fopen(file4,"r")) == NULL)
+	     {
+	       fprintf(stderr,"%s :impossible d'ouvrir %s\n",prog, file3);
+	       exit(1);
+	     }
+	   else
+	     {
+	       /* Ouverture du champ de permeabilite K */
+	       (*gwnoise).vector = (double *) malloc(n * sizeof(double));
+	       for (i=0;i<n;i++)
+		 (*gwnoise).vector[i]=atof(ReadLine(fp));
+	       fclose(fp);
+	     }
+	 }
+       
+       break;
+     }
+  return;
+}

fftma_module/gen/LIB_IO/readdata2.c

@@ -0,0 +1,205 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include "genlib.h"
+#include "simpio.h"
+#include "geostat.h"
+#include "pressure.h"
+#include "toolsIO.h"
+
+
+void readdata2(long *seed,struct grid_mod *grid,string filename[8],struct vario_mod *variogram,struct statistic_mod *stat,struct pressure_mod *pression,int *Ksolver,int *genere, int *gwnwrite, int *format_file, struct realization_mod *Kfield,struct  realization_mod *gwnoise, char *argv[])
+{
+  FILE *fp;
+  int i,j,n;
+  char *file1,*file2,*file3,*file4,*file5;
+  char *prog=argv[0];
+  double tmp;
+
+  file1=argv[1];
+  file2=argv[2];
+
+  /* Ouverture du fichier de données principal */
+
+  if ((fp=fopen(file1,"r")) == NULL)
+    {
+      fprintf(stderr,"%s :impossible d'ouvrir %s\n",prog, file1);
+      exit(1);
+    }
+  else
+    {
+      *Ksolver = atoi(ReadLine(fp));
+      *genere = atoi(ReadLine(fp));
+      *gwnwrite = atoi(ReadLine(fp));
+      if (*gwnwrite==0)
+	{
+	  filename[0] = ReadLine(fp);
+	}
+      *format_file=atoi(ReadLine(fp));
+      (*grid).NX = atoi(ReadLine(fp));
+      (*grid).NY = atoi(ReadLine(fp));
+      (*grid).NZ = atoi(ReadLine(fp));
+      (*grid).DX = atof(ReadLine(fp));
+      (*grid).DY = atof(ReadLine(fp));
+      (*grid).DZ = atof(ReadLine(fp));
+
+      fclose(fp);
+    }
+  n=(*grid).NX*(*grid).NY*(*grid).NZ;
+
+/* Ouverture du fichier de données sur le champ de perméabilité */
+
+  if ((fp=fopen(file2,"r")) == NULL)
+    {
+      fprintf(stderr,"%s :impossible d'ouvrir %s\n",prog, file2);
+      exit(1);
+    }
+  else
+    {
+      *seed=atoi(ReadLine(fp));
+      (*variogram).Nvario = atoi(ReadLine(fp));
+      (*variogram).vario = (int *) malloc((*variogram).Nvario * sizeof(int));
+      (*variogram).alpha = (double *) malloc((*variogram).Nvario * sizeof(double));      
+      (*variogram).ap = (double *) malloc(9*(*variogram).Nvario * sizeof(double));
+      (*variogram).scf = (double *) malloc(3*(*variogram).Nvario * sizeof(double));
+      (*variogram).var = (double *) malloc((*variogram).Nvario * sizeof(double));
+      for (i= 0; i < (*variogram).Nvario; i++) {
+	(*variogram).var[i] = atof(ReadLine(fp));
+	(*variogram).vario[i] = atoi(ReadLine(fp));
+	(*variogram).alpha[i] = atof(ReadLine(fp));
+	for (j = 0; j < 3; j++) 
+	  (*variogram).scf[i*3+j]= atof(ReadLine(fp));
+	for (j = 0; j < 6; j++) 
+	  (*variogram).ap[i*9+j] = atof(ReadLine(fp));
+      }
+      /*statistical data*/
+      (*stat).nblock_mean = 1;
+      (*stat).nblock_var = 1;
+      (*stat).mean = (double *)malloc((*stat).nblock_mean * sizeof(double));
+      if ((*stat).mean == NULL)
+	Error("No memory available");
+      (*stat).variance = (double *)malloc((*stat).nblock_var * sizeof(double));
+      if ((*stat).variance == NULL)
+	Error("No memory available");
+      
+      (*stat).mean[0] = atof(ReadLine(fp));
+      (*stat).variance[0] = atof(ReadLine(fp));
+      (*stat).type = atoi(ReadLine(fp));
+      
+      filename[1] = ReadLine(fp);
+      fclose(fp);
+    }
+
+    switch (*Ksolver)
+     {
+     case 0:
+       /*  Ouverture du fichier contenant le gaussian white noise */
+       if (*genere == 1)
+	 {
+	   file3=argv[3];
+	   if ((fp=fopen(file3,"r")) == NULL)
+	     {
+	       fprintf(stderr,"%s :impossible d'ouvrir %s\n",prog, file3);
+	       exit(1);
+	     }
+	   else
+	     {
+	       /* Ouverture du champ de permeabilite K */
+	       (*gwnoise).vector = (double *) malloc(n * sizeof(double));
+	       for (i=0;i<n;i++)
+		 {
+		   /* 		 (*gwnoise).vector[i]=atof(ReadLine(fp)); */
+		   /* sscanf(ReadLine(fp)," %Lf %c",gwnoise.vector[i],&merde); */
+		   fscanf(fp,"%lf",&tmp);
+		   (*gwnoise).vector[i]= tmp;
+		 }
+	       fclose(fp);
+	     }
+	 }
+       break;
+     case 1:
+       file3=argv[3];
+       /* Ouverture du fichier de données de pression*/
+       if ((fp=fopen(file3,"r")) == NULL)
+	 {
+	   fprintf(stderr,"%s :impossible d'ouvrir %s\n",prog, file3);
+	   exit(1);
+	 }
+       else
+	 {
+	   /*  testopenfile(fp); */ 
+	   filename[2] = ReadLine(fp);
+	   filename[3] = ReadLine(fp);
+	   (*pression).x = atof(ReadLine(fp));
+	   (*pression).y = atof(ReadLine(fp));
+	   (*pression).z = atof(ReadLine(fp));
+	   filename[4] = ReadLine(fp);
+	   filename[5] = ReadLine(fp);
+	   filename[6] = ReadLine(fp);
+	   filename[7] = ReadLine(fp);
+	   fclose(fp);
+	 }
+
+       /* Ouverture du champ de permeabilite K */
+       (*Kfield).vector = (double *) malloc(n * sizeof(double));
+       file4=argv[4];
+       if ((fp=fopen(file4,"r")) == NULL)
+	 {
+	   fprintf(stderr,"%s :impossible d'ouvrir %s\n",prog, file4);
+	   exit(1);
+	 }
+       else
+	 {
+	   for (i=0;i<n;i++)
+	     (*Kfield).vector[i]=atof(ReadLine(fp));
+	   fclose(fp);
+	 }
+       break;
+     case 2:
+       
+       /* Ouverture du fichier de données de pression */
+       file3=argv[3];
+       if ((fp=fopen(file3,"r")) == NULL)
+	 {
+	   fprintf(stderr,"%s :impossible d'ouvrir %s\n",prog, file3);
+	   exit(1);
+	 }
+       else
+	 {
+	   /*  testopenfile(fp); */ 
+	   filename[2] = ReadLine(fp);
+	   filename[3] = ReadLine(fp);
+	   (*pression).x = atof(ReadLine(fp));
+	   (*pression).y = atof(ReadLine(fp));
+	   (*pression).z = atof(ReadLine(fp));
+	   filename[4] = ReadLine(fp);
+	   filename[5] = ReadLine(fp);
+	   filename[6] = ReadLine(fp);
+	   filename[7] = ReadLine(fp);
+	   fclose(fp);
+	 }
+       /*  Ouverture du fichier contenant le gaussian white noise */
+       if (*genere == 1)
+	 {       
+	   file4=argv[4];
+	   if ((fp=fopen(file4,"r")) == NULL)
+	     {
+	       fprintf(stderr,"%s :impossible d'ouvrir %s\n",prog, file3);
+	       exit(1);
+	     }
+	   else
+	     {
+	       /* Ouverture du champ de permeabilite K */
+	       (*gwnoise).vector = (double *) malloc(n * sizeof(double));
+	       for (i=0;i<n;i++)
+		 (*gwnoise).vector[i]=atof(ReadLine(fp));
+	       fclose(fp);
+	     }
+	 }
+       
+       break;
+     }
+  return;
+}

fftma_module/gen/LIB_IO/readdata3.c

@@ -0,0 +1,206 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include "genlib.h"
+#include "simpio.h"
+#include "geostat.h"
+#include "pressure.h"
+#include "toolsIO.h"
+
+
+void readdata3(long *seed,struct grid_mod *grid,string filename[8],struct vario_mod *variogram,struct statistic_mod *stat,struct pressure_mod *pression,int *Ksolver,int *genere, int *gwnwrite, int *format_file,int *Psolver, struct realization_mod *Kfield,struct  realization_mod *gwnoise, char *argv[])
+{
+  FILE *fp;
+  int i,j,n;
+  char *file1,*file2,*file3,*file4,*file5;
+  char *prog=argv[0];
+  double tmp;
+
+  file1=argv[1];
+  file2=argv[2];
+
+  /* Ouverture du fichier de données principal */
+
+  if ((fp=fopen(file1,"r")) == NULL)
+    {
+      fprintf(stderr,"%s :impossible d'ouvrir %s\n",prog, file1);
+      exit(1);
+    }
+  else
+    {
+      *Ksolver = atoi(ReadLine(fp));
+      *genere = atoi(ReadLine(fp));
+      *gwnwrite = atoi(ReadLine(fp));
+      if (*gwnwrite==0)
+	{
+	  filename[0] = ReadLine(fp);
+	}
+      *format_file=atoi(ReadLine(fp));
+      *Psolver=atoi(ReadLine(fp));
+      (*grid).NX = atoi(ReadLine(fp));
+      (*grid).NY = atoi(ReadLine(fp));
+      (*grid).NZ = atoi(ReadLine(fp));
+      (*grid).DX = atof(ReadLine(fp));
+      (*grid).DY = atof(ReadLine(fp));
+      (*grid).DZ = atof(ReadLine(fp));
+
+      fclose(fp);
+    }
+  n=(*grid).NX*(*grid).NY*(*grid).NZ;
+
+/* Ouverture du fichier de données sur le champ de perméabilité */
+
+  if ((fp=fopen(file2,"r")) == NULL)
+    {
+      fprintf(stderr,"%s :impossible d'ouvrir %s\n",prog, file2);
+      exit(1);
+    }
+  else
+    {
+      *seed=atoi(ReadLine(fp));
+      (*variogram).Nvario = atoi(ReadLine(fp));
+      (*variogram).vario = (int *) malloc((*variogram).Nvario * sizeof(int));
+      (*variogram).alpha = (double *) malloc((*variogram).Nvario * sizeof(double));      
+      (*variogram).ap = (double *) malloc(9*(*variogram).Nvario * sizeof(double));
+      (*variogram).scf = (double *) malloc(3*(*variogram).Nvario * sizeof(double));
+      (*variogram).var = (double *) malloc((*variogram).Nvario * sizeof(double));
+      for (i= 0; i < (*variogram).Nvario; i++) {
+	(*variogram).var[i] = atof(ReadLine(fp));
+	(*variogram).vario[i] = atoi(ReadLine(fp));
+	(*variogram).alpha[i] = atof(ReadLine(fp));
+	for (j = 0; j < 3; j++) 
+	  (*variogram).scf[i*3+j]= atof(ReadLine(fp));
+	for (j = 0; j < 6; j++) 
+	  (*variogram).ap[i*9+j] = atof(ReadLine(fp));
+      }
+      /*statistical data*/
+      (*stat).nblock_mean = 1;
+      (*stat).nblock_var = 1;
+      (*stat).mean = (double *)malloc((*stat).nblock_mean * sizeof(double));
+      if ((*stat).mean == NULL)
+	Error("No memory available");
+      (*stat).variance = (double *)malloc((*stat).nblock_var * sizeof(double));
+      if ((*stat).variance == NULL)
+	Error("No memory available");
+      
+      (*stat).mean[0] = atof(ReadLine(fp));
+      (*stat).variance[0] = atof(ReadLine(fp));
+      (*stat).type = atoi(ReadLine(fp));
+      
+      filename[1] = ReadLine(fp);
+      fclose(fp);
+    }
+
+    switch (*Ksolver)
+     {
+     case 0:
+       /*  Ouverture du fichier contenant le gaussian white noise */
+       if (*genere == 1)
+	 {
+	   file3=argv[3];
+	   if ((fp=fopen(file3,"r")) == NULL)
+	     {
+	       fprintf(stderr,"%s :impossible d'ouvrir %s\n",prog, file3);
+	       exit(1);
+	     }
+	   else
+	     {
+	       /* Ouverture du champ de permeabilite K */
+	       (*gwnoise).vector = (double *) malloc(n * sizeof(double));
+	       for (i=0;i<n;i++)
+		 {
+		   /* 		 (*gwnoise).vector[i]=atof(ReadLine(fp)); */
+		   /* sscanf(ReadLine(fp)," %Lf %c",gwnoise.vector[i],&merde); */
+		   fscanf(fp,"%lf",&tmp);
+		   (*gwnoise).vector[i]= tmp;
+		 }
+	       fclose(fp);
+	     }
+	 }
+       break;
+     case 1:
+       file3=argv[3];
+       /* Ouverture du fichier de données de pression*/
+       if ((fp=fopen(file3,"r")) == NULL)
+	 {
+	   fprintf(stderr,"%s :impossible d'ouvrir %s\n",prog, file3);
+	   exit(1);
+	 }
+       else
+	 {
+	   /*  testopenfile(fp); */ 
+	   filename[2] = ReadLine(fp);
+	   filename[3] = ReadLine(fp);
+	   (*pression).x = atof(ReadLine(fp));
+	   (*pression).y = atof(ReadLine(fp));
+	   (*pression).z = atof(ReadLine(fp));
+	   filename[4] = ReadLine(fp);
+	   filename[5] = ReadLine(fp);
+	   filename[6] = ReadLine(fp);
+	   filename[7] = ReadLine(fp);
+	   fclose(fp);
+	 }
+
+       /* Ouverture du champ de permeabilite K */
+       (*Kfield).vector = (double *) malloc(n * sizeof(double));
+       file4=argv[4];
+       if ((fp=fopen(file4,"r")) == NULL)
+	 {
+	   fprintf(stderr,"%s :impossible d'ouvrir %s\n",prog, file4);
+	   exit(1);
+	 }
+       else
+	 {
+	   for (i=0;i<n;i++)
+	     (*Kfield).vector[i]=atof(ReadLine(fp));
+	   fclose(fp);
+	 }
+       break;
+     case 2:
+       
+       /* Ouverture du fichier de données de pression */
+       file3=argv[3];
+       if ((fp=fopen(file3,"r")) == NULL)
+	 {
+	   fprintf(stderr,"%s :impossible d'ouvrir %s\n",prog, file3);
+	   exit(1);
+	 }
+       else
+	 {
+	   /*  testopenfile(fp); */ 
+	   filename[2] = ReadLine(fp);
+	   filename[3] = ReadLine(fp);
+	   (*pression).x = atof(ReadLine(fp));
+	   (*pression).y = atof(ReadLine(fp));
+	   (*pression).z = atof(ReadLine(fp));
+	   filename[4] = ReadLine(fp);
+	   filename[5] = ReadLine(fp);
+	   filename[6] = ReadLine(fp);
+	   filename[7] = ReadLine(fp);
+	   fclose(fp);
+	 }
+       /*  Ouverture du fichier contenant le gaussian white noise */
+       if (*genere == 1)
+	 {       
+	   file4=argv[4];
+	   if ((fp=fopen(file4,"r")) == NULL)
+	     {
+	       fprintf(stderr,"%s :impossible d'ouvrir %s\n",prog, file3);
+	       exit(1);
+	     }
+	   else
+	     {
+	       /* Ouverture du champ de permeabilite K */
+	       (*gwnoise).vector = (double *) malloc(n * sizeof(double));
+	       for (i=0;i<n;i++)
+		 (*gwnoise).vector[i]=atof(ReadLine(fp));
+	       fclose(fp);
+	     }
+	 }
+       
+       break;
+     }
+  return;
+}

fftma_module/gen/LIB_IO/readfile_bin.c

@@ -0,0 +1,35 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include <math.h>
+#include "genlib.h"
+#include "geostat.h"
+
+/*readfile  */
+/* read in the file "filename" the vector values of a */
+/* realization_mod variable   */
+/* filename: explicit         */
+/* realin: structure defining a realization */
+
+void readfile_bin(string filename, struct realization_mod *realin)
+{
+  FILE *fp;
+  int i;
+  double prout;
+
+  /*read the permeability realization*/
+
+
+  fp = fopen(filename, "r");
+
+  for (i=0;i<(*realin).n;i++)
+    {
+      fread(&prout,sizeof(double),1,fp);
+      printf("Prout: %15.10f\n",prout);
+    }
+
+  fclose(fp);
+  return;
+}

fftma_module/gen/LIB_IO/testmemory.c

@@ -0,0 +1,15 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include <math.h>
+
+void testmemory(double *realint)
+{
+  if (realint == NULL) {
+    printf("Testmemory.c:  No memory available \n");
+    exit;
+  }
+  return;
+}

fftma_module/gen/LIB_IO/testopenfile.c

@@ -0,0 +1,16 @@
+#include <stdio.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdarg.h>
+#include <stdlib.h>
+#include <math.h>
+
+void testopenfile(FILE *fp)
+{
+  if (fp == NULL) 
+    {
+      printf("Erreur d'ouverture de fichier\n");
+      exit(0);
+    }
+  return;
+}